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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2amb 17H Androgen receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2amb 17HAndrogen receptor / 1.174
1xq3 R18Androgen receptor / 0.964
2ao6 R18Androgen receptor / 0.921
1e3g R18Androgen receptor / 0.904
1xow R18Androgen receptor / 0.868
2am9 TESAndrogen receptor / 0.837
1t7f DHTAndrogen receptor / 0.833
1t7t DHTAndrogen receptor / 0.833
1t76 DHTAndrogen receptor / 0.829
4ofu DHTAndrogen receptor / 0.828
4oea DHTAndrogen receptor / 0.814
2ylo TESAndrogen receptor / 0.810
1t7r DHTAndrogen receptor / 0.805
2ylp TESAndrogen receptor / 0.800
2z4j DHTAndrogen receptor / 0.799
2pio DHTAndrogen receptor / 0.793
2q7l TESAndrogen receptor / 0.791
4k7a DHTAndrogen receptor / 0.781
2q7k TESAndrogen receptor / 0.765
2qpy DHTAndrogen receptor / 0.758
1t74 DHTAndrogen receptor / 0.753
4oed DHTAndrogen receptor / 0.751
1t5z DHTAndrogen receptor / 0.744
2piv DHTAndrogen receptor / 0.740
1e3k R18Progesterone receptor / 0.737
2pkl DHTAndrogen receptor / 0.731
4e5l DBHPolymerase acidic protein / 0.698
2piw DHTAndrogen receptor / 0.677
2w8y 486Progesterone receptor / 0.666
2ylq TESAndrogen receptor / 0.666
4oez DHTAndrogen receptor / 0.656