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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2abb FMN Pentaerythritol tetranitrate reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2abb FMNPentaerythritol tetranitrate reductase / 1.283
1h51 FMNPentaerythritol tetranitrate reductase / 1.276
1h63 FMNPentaerythritol tetranitrate reductase / 1.275
1h50 FMNPentaerythritol tetranitrate reductase / 1.274
3f03 FMNPentaerythritol tetranitrate reductase / 1.256
1vyr FMNPentaerythritol tetranitrate reductase / 1.242
3p84 FMNPentaerythritol tetranitrate reductase / 1.239
3p67 FMNPentaerythritol tetranitrate reductase / 1.238
3p8j FMNPentaerythritol tetranitrate reductase / 1.238
3p8i FMNPentaerythritol tetranitrate reductase / 1.230
3p74 FMNPentaerythritol tetranitrate reductase / 1.119
3p82 FMNPentaerythritol tetranitrate reductase / 1.087
3p62 FMNPentaerythritol tetranitrate reductase / 1.083
1vji FMN12-oxophytodienoate reductase 1 1.3.1.42 1.082
4h6k FMNNADPH dehydrogenase 1 1.6.99.1 1.076
1oya FMNNADPH dehydrogenase 1 1.6.99.1 1.074
4b5n FMNNAD(P)H:flavin oxidoreductase Sye4 / 1.058
4aws FMNNADH:flavin oxidoreductase Sye1 / 1.050
1icq FMN12-oxophytodienoate reductase 1 1.3.1.42 1.037
4rnx FMNNADPH dehydrogenase 1 1.6.99.1 1.021
4tmc FMNOld yellow enzyme / 1.015
3gka FMNN-ethylmaleimide reductase / 1.009
1bwk FMNNADPH dehydrogenase 1 1.6.99.1 1.008
3aty FMNProstaglandin F2a synthase / 0.998
4m5p FMNNADPH dehydrogenase / 0.992
4e2b FMNDehydrogenase / 0.991
4e2d FMNDehydrogenase / 0.986
3hgs FMN12-oxophytodienoate reductase 3 1.3.1.42 0.982
2h8x FMNXenA / 0.967
3atz FMNProstaglandin F2a synthase / 0.949
4k7y FMNNADPH dehydrogenase 1 1.6.99.1 0.946
4tmb FMNOld yellow enzyme / 0.943
4awt FMNNADH:flavin oxidoreductase Sye1 / 0.936
1gwj FMNMorphinone reductase / 0.930
4qai FMNNADPH dehydrogenase / 0.918
4utk FNRXenobiotic reductase / 0.905
1q45 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.904
4rnw FMNNADPH dehydrogenase 1 1.6.99.1 0.904
4utm FNRXenobiotic reductase / 0.897
5cpm FNRNADH:flavin oxidoreductase / 0.896
4a3u FMNNADH:flavin oxidoreductase/NADH oxidase / 0.885
3l67 FMNXenobiotic reductase / 0.883
1z41 FMNNADPH dehydrogenase / 0.881
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.881
1bwl FMNNADPH dehydrogenase 1 1.6.99.1 0.878
4qnw FMNChanoclavine-I aldehyde reductase easA / 0.875
3hf3 FMNChromate reductase / 0.873
4utl FNRXenobiotic reductase / 0.871
4yco FMNtRNA-dihydrouridine(16) synthase / 0.870
4uth FMNXenobiotic reductase / 0.866
4rnv FMNNADPH dehydrogenase 1 1.6.99.1 0.862
2hs8 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.857
3n19 FNRXenobiotic reductase / 0.854
3l5l FMNXenobiotic reductase / 0.851
4df2 FMNNADPH dehydrogenase / 0.851
1z48 FMNNADPH dehydrogenase / 0.850
3tjl FMNNADPH dehydrogenase / 0.847
1vhn FMNtRNA-dihydrouridine synthase / 0.845
1z44 FMNNADPH dehydrogenase / 0.838
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.835
3n14 FMNXenobiotic reductase / 0.834
1ics FMN12-oxophytodienoate reductase 1 1.3.1.42 0.832
2gou FMNNADH:flavin oxidoreductase Sye1 / 0.830
2gqa FMNNADH:flavin oxidoreductase Sye1 / 0.822
2djl FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.811
2djx FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.809
3gye FMNDihydroorotate dehydrogenase (fumarate) / 0.804
4xq6 FMNDihydroorotate dehydrogenase (quinone) / 0.802
1oyc FMNNADPH dehydrogenase 1 1.6.99.1 0.799
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.798
4jic FMNGTN Reductase / 0.796
3hgr FMN12-oxophytodienoate reductase 1 1.3.1.42 0.793
1k02 FMNNADPH dehydrogenase 1 1.6.99.1 0.790
5ebu FMNLactate oxidase / 0.785
2du2 FMNLactate oxidase / 0.783
3gr8 FMNNADPH dehydrogenase / 0.779
4ef8 FMNDihydroorotate dehydrogenase (fumarate) / 0.776
1jue FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.760
1jub FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.759
3c3n FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.758
4ycp FMNtRNA-dihydrouridine(16) synthase / 0.756
4rnu FMNNADPH dehydrogenase 1 1.6.99.1 0.752
1icp FMN12-oxophytodienoate reductase 1 1.3.1.42 0.748
3b03 VNRIsopentenyl-diphosphate delta-isomerase / 0.742
4yx6 FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.738
4rje FNRLactate oxidase / 0.729
4wzh FMNDihydroorotate dehydrogenase (fumarate) / 0.729
1djq FMNTrimethylamine dehydrogenase 1.5.8.2 0.727
4bf9 FMNtRNA-dihydrouridine(16) synthase / 0.727
2j6x FMNLactate oxidase / 0.726
2z6i FMN2-nitropropane dioxygenase / 0.722
4yl2 FMNLactate oxidase / 0.715
2gjl FMNNitronate monooxygenase 1.13.12.16 0.714
1ofd FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.712
1gox FMNPeroxisomal (S)-2-hydroxy-acid oxidase 1.1.3.15 0.706
3oix FMNDihydroorotate dehydrogenase / 0.706
2zru FMNIsopentenyl-diphosphate delta-isomerase / 0.700
2bsl FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.698
4cw5 FMNDfnA / 0.692
1kbj FMNCytochrome b2, mitochondrial 1.1.2.3 0.681
1ep3 FMNDihydroorotate dehydrogenase B (NAD(+)), catalytic subunit 1.3.1.14 0.678
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.676
3kru FMNNADH:flavin oxidoreductase/NADH oxidase / 0.675
5eai FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.675
4bca FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.673
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.672
2nli FMNLactate oxidase / 0.671
3n3b FMNProtein NrdI / 0.671
4ef9 FMNDihydroorotate dehydrogenase (fumarate) / 0.671
3esz FMNFlavodoxin / 0.670
2vyx FMNDodecin / 0.669
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.669
2isk FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.667
4hj3 FMNLOV protein / 0.667
4zoh FADPutative oxidoreductase FAD-binding subunit / 0.665
1ofe FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.664
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.664
5a4k FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.664
3m13 FADMonomeric sarcosine oxidase 1.5.3.1 0.663
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.662
1llw FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.662
2b3d FADModulator of drug activity B / 0.661
3ue6 FMNAureochrome1 / 0.661
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.660
4yus FMNFamily 3 adenylate cyclase / 0.660
2gqw FADFerredoxin reductase / 0.659
2ohh FMNType A flavoprotein FprA 1 0.659
3vkj FNRIsopentenyl-diphosphate delta-isomerase / 0.659
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.656
2v18 FMNDodecin / 0.656
2zry FNRIsopentenyl-diphosphate delta-isomerase / 0.656
1iqr FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.655
2isj FMN5,6-dimethylbenzimidazole synthase 1.13.11.79 0.655
3w77 FMNFMN-dependent NADH-azoreductase / 0.655
1dxo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.654
3gfz FMNUncharacterized protein / 0.654
4iql FMNEnoyl-(Acyl-carrier-protein) reductase II / 0.654
2fzm FADBifunctional protein PutA 1.5.5.2 0.653
4h4p FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.653
4dna FADProbable glutathione reductase / 0.652
4ees FMNPhototropin-2 2.7.11.1 0.650
4z38 FMNMlnA / 0.650