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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2a0w DIH Purine nucleoside phosphorylase 2.4.2.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2a0w DIHPurine nucleoside phosphorylase 2.4.2.1 0.826
2a0y DIHPurine nucleoside phosphorylase 2.4.2.1 0.804
2a0x DIHPurine nucleoside phosphorylase 2.4.2.1 0.799
1rsz DIHPurine nucleoside phosphorylase 2.4.2.1 0.784
4ear IM5Purine nucleoside phosphorylase 2.4.2.1 0.745
3k8q 22APurine nucleoside phosphorylase 2.4.2.1 0.732
2p4s DIHAGAP005945-PA / 0.730
1rr6 IMHPurine nucleoside phosphorylase 2.4.2.1 0.705
2oc9 IMHPurine nucleoside phosphorylase 2.4.2.1 0.701
2q7o IMHPurine nucleoside phosphorylase 2.4.2.1 0.696
1rt9 IMHPurine nucleoside phosphorylase 2.4.2.1 0.689
2oc4 IMHPurine nucleoside phosphorylase 2.4.2.1 0.688
3bgs DIHPurine nucleoside phosphorylase 2.4.2.1 0.681
3k8o 229Purine nucleoside phosphorylase 2.4.2.1 0.681
1a9p 9DIPurine nucleoside phosphorylase 2.4.2.1 0.674
1b8o IMHPurine nucleoside phosphorylase 2.4.2.1 0.659
1b8n IMGPurine nucleoside phosphorylase 2.4.2.1 0.656
1a9s NOSPurine nucleoside phosphorylase 2.4.2.1 0.652