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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1yye 196 Estrogen receptor beta

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1yye 196Estrogen receptor beta / 1.155
1x7b 041Estrogen receptor beta / 0.782
1x78 244Estrogen receptor beta / 0.738
4zn7 DESEstrogen receptor / 0.723
1yy4 4NAEstrogen receptor beta / 0.722
2jj3 JJ3Estrogen receptor beta / 0.721
2z4b DC8Estrogen receptor beta / 0.715
1qkm GENEstrogen receptor beta / 0.690
1x7e 244Estrogen receptor / 0.689
1s9p DESEstrogen-related receptor gamma / 0.685
2nv7 555Estrogen receptor beta / 0.685
1u3r 338Estrogen receptor beta / 0.682
2j7x ESTEstrogen receptor beta / 0.679
2qgt EEDEstrogen receptor / 0.662
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
4e5i 0N9Polymerase acidic protein / 0.660
4e5f 0N7Polymerase acidic protein / 0.657
3l03 4OHEstrogen receptor / 0.655
4pp6 STLEstrogen receptor / 0.653
1x7j GENEstrogen receptor beta / 0.652
3owu EQUSteroid Delta-isomerase 5.3.3.1 0.650