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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ylr FMN Oxygen-insensitive NAD(P)H nitroreductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ylr FMNOxygen-insensitive NAD(P)H nitroreductase / 1.248
1icu FMNOxygen-insensitive NAD(P)H nitroreductase / 1.238
1nec FMNOxygen-insensitive NAD(P)H nitroreductase 1 1.232
1yki FMNOxygen-insensitive NAD(P)H nitroreductase / 1.215
1kqb FMNOxygen-insensitive NAD(P)H nitroreductase / 1.214
1kqc FMNOxygen-insensitive NAD(P)H nitroreductase / 1.214
1oon FMNOxygen-insensitive NAD(P)H nitroreductase / 1.200
1kqd FMNOxygen-insensitive NAD(P)H nitroreductase / 1.193
1oo5 FMNOxygen-insensitive NAD(P)H nitroreductase / 1.186
3x22 FMNOxygen-insensitive NAD(P)H nitroreductase / 1.162
1icv FMNOxygen-insensitive NAD(P)H nitroreductase / 1.140
1ooq FMNOxygen-insensitive NAD(P)H nitroreductase / 1.137
1ylu FMNOxygen-insensitive NAD(P)H nitroreductase / 1.095
1vfr FMNMajor NAD(P)H-flavin oxidoreductase 1.6.99 1.057
1ds7 FMNOxygen-insensitive NAD(P)H nitroreductase / 1.047
3ge6 FMNNitroreductase / 1.009
3x21 FMNOxygen-insensitive NAD(P)H nitroreductase / 1.003
3koq FMNPutative nitroreductase / 0.950
2wzv FMNNitroreductase NfnB / 0.916
3qdl FMNOxygen-insensitive NADPH nitroreductase / 0.905
2wzw FMNNitroreductase NfnB / 0.901
3of4 FMNNitroreductase / 0.880
3gag FMNPutative NADH dehydrogenase NAD(P)H nitroreductase / 0.875
2hay FMNPutative NAD(P)H-flavin oxidoreductase / 0.834
3bem FMNPutative NAD(P)H nitroreductase MhqN 1 0.830
3e39 FMNNitroreductase / 0.810
3pxv FMNNitroreductase / 0.810
4qly FMNEnone reductase CLA-ER / 0.808
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.776
2isl FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.764
2fre FMNNAD(P)H-flavin oxidoreductase / 0.743
4ttc FMNIodotyrosine deiodinase 1 / 0.743
3gfd FMNIodotyrosine deiodinase 1 1.21.1.1 0.731
3eo8 FMNPutative nitroreductase / 0.720
3to0 FMNIodotyrosine deiodinase 1 1.21.1.1 0.708
3e4v FMNUncharacterized protein / 0.700
2bkj FMNNADPH-flavin oxidoreductase / 0.698
2isj FMN5,6-dimethylbenzimidazole synthase 1.13.11.79 0.697
3hj9 FMNUncharacterized protein / 0.697
3gh8 FMNIodotyrosine deiodinase 1 1.21.1.1 0.696
4xoo FMNCoenzyme F420:L-glutamate ligase / 0.693
4eer FMNPhototropin-2 2.7.11.1 0.691
4ttb FMNIodotyrosine deiodinase 1 / 0.691
2ifa FMNUncharacterized protein / 0.689
3djl FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.682
3g6x DGTDNA polymerase iota 2.7.7.7 0.681
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.676
3pft FMNFlavin reductase / 0.670
4hnb FMNLOV protein / 0.663
1pkv RBFRiboflavin synthase 2.5.1.9 0.662
4l82 FMNUncharacterized protein / 0.661
1a8p FADFerredoxin--NADP reductase / 0.660
4pjk ADPMyosin-2 heavy chain / 0.657
4pk4 ADPUnconventional myosin-VI / 0.655
5j3w FMNSensory box protein / 0.655
2hq9 FADMll6688 protein / 0.654
3up5 FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.654
5eb5 FAD(R)-mandelonitrile lyase 1 4.1.2.10 0.652
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.651
1udy FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.651
2qa1 FADPgaE / 0.651
4d7e FADPutative lysine-N-oxygenase / 0.650
4hhd FMNPhototropin-1 2.7.11.1 0.650