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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1y9r 1CA Mineralocorticoid receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1y9r 1CAMineralocorticoid receptor / 1.196
2aax PDNMineralocorticoid receptor / 0.930
2aa7 1CAMineralocorticoid receptor / 0.877
2abi 1CAMineralocorticoid receptor / 0.860
2a3i C0RMineralocorticoid receptor / 0.849
2aa2 AS4Mineralocorticoid receptor / 0.843
2aa6 STRMineralocorticoid receptor / 0.824
1ya3 STRMineralocorticoid receptor / 0.762
2ab2 SNLMineralocorticoid receptor / 0.761
4udc DEXGlucocorticoid receptor / 0.742
1gs4 ZK5Androgen receptor / 0.719
1p93 DEXGlucocorticoid receptor / 0.716
3mno DEXGlucocorticoid receptor / 0.708
1sqn NDRProgesterone receptor / 0.704
2pkl DHTAndrogen receptor / 0.696
3w5r LOAVitamin D3 receptor / 0.694
4q0a 4OAVitamin D3 receptor A / 0.694
1t5z DHTAndrogen receptor / 0.686
3w5p 4OAVitamin D3 receptor / 0.686
2q7k TESAndrogen receptor / 0.683
4p6x HCYGlucocorticoid receptor / 0.683
4e5l DBHPolymerase acidic protein / 0.679
3d90 NOGProgesterone receptor / 0.678
1p8d CO1Oxysterols receptor LXR-beta / 0.676
3cmf PDN3-oxo-5-beta-steroid 4-dehydrogenase / 0.676
3mne DEXGlucocorticoid receptor / 0.674
3vhu SNLMineralocorticoid receptor / 0.674
3mnp DEXGlucocorticoid receptor / 0.671
2b00 GCHPhospholipase A2, major isoenzyme 3.1.1.4 0.670
1lhv NOGSex hormone-binding globulin / 0.666
2ovh AS0Progesterone receptor / 0.664
4k7a DHTAndrogen receptor / 0.664
1lhn AONSex hormone-binding globulin / 0.661
2ocf ESTEstrogen receptor / 0.661
2rlc CHDCholoylglycine hydrolase 3.5.1.24 0.661
1o1v TCHGastrotropin / 0.660
4a2j AS0Progesterone receptor / 0.657
2w8y NDRProgesterone receptor / 0.656
1h60 STRPentaerythritol tetranitrate reductase / 0.655
4nky 3QZSteroid 17-alpha-hydroxylase/17,20 lyase / 0.655
1zq5 E04Aldo-keto reductase family 1 member C3 / 0.654
2qd4 CHDFerrochelatase, mitochondrial 4.99.1.1 0.654
2pip DHTAndrogen receptor / 0.653
4apu A2KProgesterone receptor / 0.653
2ovm AS0Progesterone receptor / 0.652
2w8y 486Progesterone receptor / 0.652
4hlw TESAndrogen receptor / 0.652
1d2s DHTSex hormone-binding globulin / 0.651
4pxm ESTEstrogen receptor / 0.650