sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1y6r | MTM | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase | 3.2.2.9 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1y6r | MTM | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase | 3.2.2.9 | 1.069 | |
| 3eei | MTM | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase | / | 0.991 | |
| 1nc1 | MTH | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase | 3.2.2.9 | 0.945 | |
| 1zos | MTM | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase | / | 0.894 | |
| 4bmz | MTA | Aminodeoxyfutalosine nucleosidase | / | 0.894 | |
| 4wkb | TDI | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase | / | 0.809 | |
| 4x24 | TDI | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase | / | 0.776 | |
| 1y6q | TDI | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase | 3.2.2.9 | 0.757 | |
| 2qtg | MTH | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 | 3.2.2.9 | 0.727 | |
| 3fow | IMH | Purine nucleoside phosphorylase | / | 0.726 | |
| 1jdv | ADN | Purine nucleoside phosphorylase | / | 0.720 | |
| 1nw4 | IMH | Purine nucleoside phosphorylase | / | 0.718 | |
| 1pk9 | 2FA | Purine nucleoside phosphorylase DeoD-type | / | 0.718 | |
| 2i4t | UA2 | Purine nucleoside phosphorylase, putative | / | 0.697 | |
| 4ts9 | FMC | Purine nucleoside phosphorylase DeoD-type | / | 0.695 | |
| 4ttj | FMC | Purine nucleoside phosphorylase DeoD-type | / | 0.679 | |
| 3uaz | NOS | Purine nucleoside phosphorylase DeoD-type | / | 0.677 | |
| 1k9s | FM1 | Purine nucleoside phosphorylase DeoD-type | / | 0.663 | |
| 2hwu | URI | Uridine phosphorylase | 2.4.2.3 | 0.658 | |
| 1cg6 | MTA | S-methyl-5'-thioadenosine phosphorylase | / | 0.651 | |
| 2zfu | SAH | Ribosomal RNA-processing protein 8 | / | 0.650 |