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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1xyy FMN Flavodoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1xyy FMNFlavodoxin / 1.127
1j9g FMNFlavodoxin / 1.044
1c7f FMNFlavodoxin / 0.962
2fx2 FMNFlavodoxin / 0.955
1akr FMNFlavodoxin / 0.945
1xyv FMNFlavodoxin / 0.923
1j8q FMNFlavodoxin / 0.919
3f6r FMNFlavodoxin / 0.918
1azl FMNFlavodoxin / 0.911
1aku FMNFlavodoxin / 0.873
3f6s FMNFlavodoxin / 0.871
5tgz FMNCannabinoid receptor 1 / 0.868
1akw FMNFlavodoxin / 0.861
1wsb FMNFlavodoxin / 0.845
2v5u FMNFlavodoxin / 0.819
1ahn FMNFlavodoxin 1 / 0.815
3kaq FMNFlavodoxin / 0.813
3kap FMNFlavodoxin / 0.811
3esz FMNFlavodoxin / 0.804
1fx1 FMNFlavodoxin / 0.780
4fx2 FMNFlavodoxin / 0.780
5xr8 FMNCannabinoid receptor 1 / 0.778
1czn FMNFlavodoxin / 0.777
3f90 FMNFlavodoxin / 0.776
1ofv FMNFlavodoxin / 0.762
4oxx FMNCindoxin / 0.758
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.744
5xra FMNCannabinoid receptor 1 / 0.733
3n39 FMNProtein NrdI / 0.717
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.709
2v5v FMNFlavodoxin / 0.705
4yao FMNNADPH--cytochrome P450 reductase / 0.702
1amo FMNNADPH--cytochrome P450 reductase / 0.699
1bu5 RBFFlavodoxin / 0.698
3n3b FMNProtein NrdI / 0.694
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.692
2fcr FMNFlavodoxin / 0.691
5fx2 FMNFlavodoxin / 0.691
2bf4 FMNNADPH--cytochrome P450 reductase / 0.690
2bn4 FMNNADPH--cytochrome P450 reductase / 0.689
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.685
4bmp FMNProtein NrdI / 0.683
1ja0 FMNNADPH--cytochrome P450 reductase / 0.682
3qe2 FMNNADPH--cytochrome P450 reductase / 0.681
3qfr FMNNADPH--cytochrome P450 reductase / 0.681
3esy FMNFlavodoxin / 0.680
4bmo FMNProtein NrdI / 0.680
3n3a FMNProtein NrdI / 0.673
1ycg FMNNitric oxide reductase 1 0.672
3ojw FMNNADPH--cytochrome P450 reductase / 0.661
2ohi FMNType A flavoprotein FprA 1 0.658
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.656