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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1xq0 4TR Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1xq0 4TRCarbonic anhydrase 2 4.2.1.1 0.856
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3s9t E49Carbonic anhydrase 2 4.2.1.1 0.734
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.728
3m96 E38Carbonic anhydrase 2 4.2.1.1 0.716
3m98 E02Carbonic anhydrase 2 4.2.1.1 0.712
1if5 FBTCarbonic anhydrase 2 4.2.1.1 0.709
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.709
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.706
4knm E1ECarbonic anhydrase 13 4.2.1.1 0.700
3l14 I7BCarbonic anhydrase 2 4.2.1.1 0.694
4kni E1ECarbonic anhydrase 2 4.2.1.1 0.694
1cnx EG2Carbonic anhydrase 2 4.2.1.1 0.693
3oim VZ5Carbonic anhydrase 2 4.2.1.1 0.690
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.688
4knn E1FCarbonic anhydrase 13 4.2.1.1 0.688
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.684
3mho J43Carbonic anhydrase 2 4.2.1.1 0.684
3s8x E59Carbonic anhydrase 2 4.2.1.1 0.682
3sax E50Carbonic anhydrase 2 4.2.1.1 0.682
4itp 1GDCarbonic anhydrase 2 4.2.1.1 0.681
4knj E1FCarbonic anhydrase 2 4.2.1.1 0.679
4kp5 E1FCarbonic anhydrase 12 4.2.1.1 0.679
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.677
3f4x KLTCarbonic anhydrase 2 4.2.1.1 0.677
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.677
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.676
3n2p AYXCarbonic anhydrase 2 4.2.1.1 0.676
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.675
3myq E27Carbonic anhydrase 2 4.2.1.1 0.675
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.674
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.670
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.669
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.669
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.668
2q1q OSPCarbonic anhydrase 2 4.2.1.1 0.667
4kap 1QVCarbonic anhydrase 2 4.2.1.1 0.667
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.666
1if6 FBUCarbonic anhydrase 2 4.2.1.1 0.665
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.665
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.665
1okl MNSCarbonic anhydrase 2 4.2.1.1 0.664
3ml2 SU0Carbonic anhydrase 2 4.2.1.1 0.664
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.664
1if8 SBSCarbonic anhydrase 2 4.2.1.1 0.663
2weh FB1Carbonic anhydrase 2 4.2.1.1 0.663
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.660
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.660
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.658
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.655
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.655
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.654
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.652
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.652
3bl1 BL1Carbonic anhydrase 2 4.2.1.1 0.652