sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1xa4 | COA | L-carnitine CoA-transferase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1xa4 | COA | L-carnitine CoA-transferase | / | 1.283 | |
| 1xvt | COA | L-carnitine CoA-transferase | / | 0.921 | |
| 1xvv | CCQ | L-carnitine CoA-transferase | / | 0.808 | |
| 1q6y | COA | Formyl-CoA:oxalate CoA-transferase | / | 0.712 | |
| 1t3z | CAO | Formyl-CoA:oxalate CoA-transferase | / | 0.693 | |
| 1fy7 | COA | Histone acetyltransferase ESA1 | / | 0.676 | |
| 1mja | COA | Histone acetyltransferase ESA1 | / | 0.675 | |
| 1vgq | CAO | Formyl-CoA:oxalate CoA-transferase | / | 0.671 | |
| 4c2x | NHW | Glycylpeptide N-tetradecanoyltransferase 2 | / | 0.669 | |
| 2vjm | COA | Formyl-CoA:oxalate CoA-transferase | / | 0.668 | |
| 5kf8 | COA | Predicted acetyltransferase | / | 0.667 | |
| 1mj9 | COA | Histone acetyltransferase ESA1 | / | 0.664 | |
| 1pu9 | COA | HAT A1 | / | 0.660 | |
| 4ri1 | ACO | UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase | 2.3.1.202 | 0.659 | |
| 5ag4 | MYA | Glycylpeptide N-tetradecanoyltransferase | / | 0.659 | |
| 4jwp | ACO | GCN5-related N-acetyltransferase | / | 0.658 | |
| 2giv | ACO | Histone acetyltransferase KAT8 | / | 0.655 | |
| 3r96 | ACO | MccE protein | / | 0.652 |