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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1x7j GEN Estrogen receptor beta

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1x7j GENEstrogen receptor beta / 1.005
1qkm GENEstrogen receptor beta / 0.945
1zaf 789Estrogen receptor beta / 0.897
2nv7 555Estrogen receptor beta / 0.819
2qa8 GENEstrogen receptor / 0.764
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1u9e 397Estrogen receptor beta / 0.742
1yy4 4NAEstrogen receptor beta / 0.742
4iw6 1GUEstrogen receptor / 0.715
2j7y E3OEstrogen receptor beta / 0.696
1l2i ETCEstrogen receptor / 0.695
4iv4 1GSEstrogen receptor / 0.673
1s9p DESEstrogen-related receptor gamma / 0.665
1gwq ZTWEstrogen receptor / 0.663
4e5f 0N7Polymerase acidic protein / 0.660
2b1z 17MEstrogen receptor / 0.658
2piq DHTAndrogen receptor / 0.658
2q70 DC8Estrogen receptor / 0.657
1yye 196Estrogen receptor beta / 0.652