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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1wsb FMN Flavodoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1wsb FMNFlavodoxin / 1.230
1j8q FMNFlavodoxin / 1.220
2fx2 FMNFlavodoxin / 1.168
1akr FMNFlavodoxin / 1.088
1xyv FMNFlavodoxin / 1.080
1azl FMNFlavodoxin / 1.073
1akw FMNFlavodoxin / 1.053
1c7f FMNFlavodoxin / 1.040
1aku FMNFlavodoxin / 1.002
1j9g FMNFlavodoxin / 0.974
3f6s FMNFlavodoxin / 0.967
1ahn FMNFlavodoxin 1 / 0.955
5tgz FMNCannabinoid receptor 1 / 0.920
3esz FMNFlavodoxin / 0.916
1czn FMNFlavodoxin / 0.909
2v5u FMNFlavodoxin / 0.905
1ofv FMNFlavodoxin / 0.903
4fx2 FMNFlavodoxin / 0.888
3f90 FMNFlavodoxin / 0.887
3kap FMNFlavodoxin / 0.868
3esy FMNFlavodoxin / 0.866
1fx1 FMNFlavodoxin / 0.856
1yob FMNFlavodoxin 2 / 0.849
1xyy FMNFlavodoxin / 0.845
3f6r FMNFlavodoxin / 0.841
4oxx FMNCindoxin / 0.825
2fcr FMNFlavodoxin / 0.821
2v5v FMNFlavodoxin / 0.820
5xr8 FMNCannabinoid receptor 1 / 0.780
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.778
3qe2 FMNNADPH--cytochrome P450 reductase / 0.776
4yao FMNNADPH--cytochrome P450 reductase / 0.775
5fx2 FMNFlavodoxin / 0.767
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.765
1fue FMNFlavodoxin / 0.760
2bf4 FMNNADPH--cytochrome P450 reductase / 0.759
5xra FMNCannabinoid receptor 1 / 0.755
2bn4 FMNNADPH--cytochrome P450 reductase / 0.754
1amo FMNNADPH--cytochrome P450 reductase / 0.753
3qfr FMNNADPH--cytochrome P450 reductase / 0.751
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.747
4y7c FMNNADPH--cytochrome P450 reductase / 0.747
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.746
2mok FMNFlavodoxin 1 / 0.739
3n39 FMNProtein NrdI / 0.736
2ohi FMNType A flavoprotein FprA 1 0.732
3ojx FMNNADPH--cytochrome P450 reductase / 0.732
1ja0 FMNNADPH--cytochrome P450 reductase / 0.730
4bmo FMNProtein NrdI / 0.730
4bmp FMNProtein NrdI / 0.729
2ohj FMNType A flavoprotein FprA 1 0.727
3ojw FMNNADPH--cytochrome P450 reductase / 0.715
2w5u FMNFlavodoxin / 0.713
2q9u FMNA-type flavoprotein / 0.710
1ycg FMNNitric oxide reductase 1 0.706
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.702
3kaq FMNFlavodoxin / 0.697
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.694
3n3b FMNProtein NrdI / 0.691
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.680
3mpi FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.678
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.677
2zfa FMNLactate oxidase / 0.677
2nli FMNLactate oxidase / 0.676
1tj0 FADBifunctional protein PutA 1.5.5.2 0.675
3e2s FADBifunctional protein PutA 1.5.5.2 0.674
3mkh FADNitroalkane oxidase / 0.672
5efw FMNNPH1-1 / 0.671
1siq FADGlutaryl-CoA dehydrogenase, mitochondrial 1.3.8.6 0.670
3g5m FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.670
1ja1 FMNNADPH--cytochrome P450 reductase / 0.668
1bu5 RBFFlavodoxin / 0.667
3n3a FMNProtein NrdI / 0.667
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.667
5f12 FMNNAD(P)H dehydrogenase (quinone) / 0.667
2fzm FADBifunctional protein PutA 1.5.5.2 0.663
2g37 FADProline dehydrogenase / 0.663
4j8p FMNFlavodoxin / 0.661
4qai FMNNADPH dehydrogenase / 0.659
1j9z FMNNADPH--cytochrome P450 reductase / 0.657
1qx4 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.654
2dvl FADAcyl-CoA dehydrogenase / 0.654
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.654
1ych FMNNitric oxide reductase 1 0.652
1gox FMNPeroxisomal (S)-2-hydroxy-acid oxidase 1.1.3.15 0.651
3klb FMNUncharacterized protein / 0.651
1gwj FMNMorphinone reductase / 0.650
5a8a FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.650