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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1wc1 TAT Adenylate cyclase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1wc1 TATAdenylate cyclase / 0.980
1cjv DADAdenylate cyclase type 2 / 0.702
1cjv DADAdenylate cyclase type 5 / 0.702
1wc4 APCAdenylate cyclase / 0.699
1wc3 APCAdenylate cyclase / 0.674
1wc0 APCAdenylate cyclase / 0.666
3wbz ATPtRNA(His) guanylyltransferase {ECO:0000256|PIRNR:PIRNR028980} / 0.659
2aj4 ANPGalactokinase 2.7.1.6 0.650
4bix ADPSensor histidine kinase CpxA / 0.650