3.000 Å
X-ray
2004-11-08
Name: | Adenylate cyclase |
---|---|
ID: | O32393_ARTPT |
AC: | O32393 |
Organism: | Arthrospira platensis |
Reign: | Bacteria |
TaxID: | 118562 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 57 % |
B | 43 % |
B-Factor: | 10.950 |
---|---|
Number of residues: | 30 |
Including | |
Standard Amino Acids: | 30 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.139 | 2649.375 |
% Hydrophobic | % Polar |
---|---|
43.31 | 56.69 |
According to VolSite |
HET Code: | APC |
---|---|
Formula: | C11H14N5O12P3 |
Molecular weight: | 501.176 g/mol |
DrugBank ID: | DB02596 |
Buried Surface Area: | 59.07 % |
Polar Surface area: | 310.64 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 16 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
33.8567 | 3.77461 | 57.9203 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C1' | CZ | PHE- 1015 | 4.5 | 0 | Hydrophobic |
O2G | N | GLY- 1020 | 2.99 | 146.66 | H-Bond (Protein Donor) |
O2G | N | THR- 1022 | 2.96 | 123.41 | H-Bond (Protein Donor) |
N1 | NZ | LYS- 1057 | 3 | 169.44 | H-Bond (Protein Donor) |
N6 | OG1 | THR- 1139 | 3 | 145.68 | H-Bond (Ligand Donor) |
C5' | CB | ASN- 1146 | 4.24 | 0 | Hydrophobic |
C4' | CB | ALA- 1149 | 4.4 | 0 | Hydrophobic |
C1' | CB | ALA- 1149 | 3.89 | 0 | Hydrophobic |
O2A | NH2 | ARG- 1150 | 2.66 | 122.73 | H-Bond (Protein Donor) |
O2A | CZ | ARG- 1150 | 3.94 | 0 | Ionic (Protein Cationic) |
O2B | NZ | LYS- 1184 | 2.73 | 0 | Ionic (Protein Cationic) |
O2A | NZ | LYS- 1184 | 3.14 | 0 | Ionic (Protein Cationic) |
O2A | NZ | LYS- 1184 | 3.14 | 164.28 | H-Bond (Protein Donor) |