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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1uuo BRF Dihydroorotate dehydrogenase (quinone), mitochondrial 1.3.5.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1uuo BRFDihydroorotate dehydrogenase (quinone), mitochondrial 1.3.5.2 1.244
2prh 238Dihydroorotate dehydrogenase (quinone), mitochondrial 1.3.5.2 0.821
1d3g BREDihydroorotate dehydrogenase (quinone), mitochondrial 1.3.5.2 0.817
4c13 UMLUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase / 0.686
3o5t ADPNitrogen regulatory protein P-II 1 / 0.669
1n38 U3HRNA-directed RNA polymerase lambda-3 2.7.7.48 0.659
1qiq ACCIsopenicillin N synthase 1.21.3.1 0.654
2bp1 NDPAflatoxin B1 aldehyde reductase member 2 / 0.654
5ify TRHGlucose-1-phosphate thymidylyltransferase / 0.652
3to3 ATPPetrobactin biosynthesis protein AsbB / 0.650