Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1udt VIA cGMP-specific 3',5'-cyclic phosphodiesterase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1udt VIAcGMP-specific 3',5'-cyclic phosphodiesterase / 0.954
2h42 VIAcGMP-specific 3',5'-cyclic phosphodiesterase / 0.761
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1uho VDNcGMP-specific 3',5'-cyclic phosphodiesterase / 0.739
4g2w NI0cGMP-specific 3',5'-cyclic phosphodiesterase / 0.730
4ia0 5BBcGMP-specific 3',5'-cyclic phosphodiesterase / 0.706
4g2y NI5cGMP-specific 3',5'-cyclic phosphodiesterase / 0.684
4oex 5EOcGMP-specific 3',5'-cyclic phosphodiesterase / 0.677
3bjc WANcGMP-specific 3',5'-cyclic phosphodiesterase / 0.664
4oew 5IOcGMP-specific 3',5'-cyclic phosphodiesterase / 0.663
4e5f 0N7Polymerase acidic protein / 0.660