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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1u8v FAD 4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1u8v FAD4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase / 1.468
3mdd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.886
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.856
3pfd FDAAcyl-CoA dehydrogenase FadE25 / 0.816
4p13 FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.816
2pg0 FADAcyl-CoA dehydrogenase / 0.812
2eba FADPutative glutaryl-CoA dehydrogenase / 0.794
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 0.788
2vig FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.1 0.786
1egd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.769
3owa FADAcyl-CoA dehydrogenase / 0.768
4x28 FDAAcyl-CoA dehydrogenase FadE26 / 0.760
4x28 FDAAcyl-CoA dehydrogenase FadE27 / 0.760
2yyl FAD4-hydroxyphenylacetate 3-monooxygenase oxygenase component 1.14.14.9 0.744
3nf4 FADAcyl-CoA dehydrogenase domain-containing protein / 0.741
5ahs FADAcyl-CoA dehydrogenase / 0.738
2yyi FAD4-hydroxyphenylacetate 3-monooxygenase oxygenase component 1.14.14.9 0.735
2ix5 FADAcyl-coenzyme A oxidase 4, peroxisomal 1.3.3.6 0.731
4m9a FDAAcyl-CoA dehydrogenase / 0.730
5af7 FADAcyl-CoA dehydrogenase / 0.730
3djl FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.729
4irn FADAnaB / 0.713
5jsc FADPutative acyl-CoA dehydrogenase / 0.712
3u33 FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.706
3sf6 FDAGlutaryl-CoA dehydrogenase / 0.705
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.705
1udy FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.702
3r7k FDAProbable acyl CoA dehydrogenase / 0.692
3p4t FAOPutative acyl-CoA dehydrogenase / 0.688
4y9l FADAcyl-CoA dehydrogenase family member 11 / 0.682
4eep FMNPhototropin-2 2.7.11.1 0.681
2dvl FADAcyl-CoA dehydrogenase / 0.671
5efw FMNNPH1-1 / 0.671
3mpj FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.667
2v1a FMNNPH1-1 / 0.665
2z1q FADAcyl-CoA dehydrogenase / 0.664
4kuk RBFPutative blue-light photoreceptor / 0.662
3fcj FADNitroalkane oxidase 1.7.3.1 0.659
4eet FMNPhototropin-2 2.7.11.1 0.658
3hji FADVivid PAS protein VVD / 0.657
5djt FMNNPH1-2 / 0.651
4hj4 FMNLOV protein / 0.650
4jy2 FAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase / 0.650