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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1u3s 797 Estrogen receptor beta

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1u3s 797Estrogen receptor beta / 1.095
4e5i 0N9Polymerase acidic protein / 0.744
1u3r 338Estrogen receptor beta / 0.701
4iwc 1GVEstrogen receptor / 0.695
2q70 DC8Estrogen receptor / 0.678
3q95 ESLEstrogen receptor / 0.666
3os3 3OSDual specificity mitogen-activated protein kinase kinase 1 2.7.12.2 0.660
4e5f 0N7Polymerase acidic protein / 0.660
1u3q 272Estrogen receptor beta / 0.652