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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1u31 NDP NAD(P) transhydrogenase, mitochondrial 1.6.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1u31 NDPNAD(P) transhydrogenase, mitochondrial 1.6.1.2 1.416
1pt9 TAPNAD(P) transhydrogenase, mitochondrial 1.6.1.2 1.293
1djl NAPNAD(P) transhydrogenase, mitochondrial 1.6.1.2 1.198
1d4o NAPNAD(P) transhydrogenase, mitochondrial / 1.120
1pnq NDPNAD(P) transhydrogenase subunit beta 1.6.1.2 1.104
1pno NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 1.095
2fsv NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 1.045
4j1t NAPNAD(P) transhydrogenase subunit beta / 1.035
1nm5 NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 1.017
2fr8 NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 1.013
4j16 NAPNAD(P) transhydrogenase subunit beta / 0.957
1hzz NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.947
1u28 NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.867
1ptj NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.806
2jah NDPClavaldehyde dehydrogenase / 0.686
5d2e NAPMlnE / 0.683
1oaa NAPSepiapterin reductase 1.1.1.153 0.680
4hwk NAPSepiapterin reductase 1.1.1.153 0.674
3p19 NDPPutative blue fluorescent protein / 0.667
4j7u NAPSepiapterin reductase 1.1.1.153 0.666
1gve NAPAflatoxin B1 aldehyde reductase member 3 1 0.665
3ai3 NDPNADPH-sorbose reductase / 0.660
4j7x NAPSepiapterin reductase 1.1.1.153 0.659
1a9c GTPGTP cyclohydrolase 1 3.5.4.16 0.657
1w73 NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.655
2gn8 NAPUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.653
1w8d NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.651
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.651
1o8c NDPProbable acrylyl-CoA reductase AcuI 1.3.1.84 0.650