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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1u1f 183 Uridine phosphorylase 2.4.2.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1u1f 183Uridine phosphorylase 2.4.2.3 1.129
1u1c BAUUridine phosphorylase 2.4.2.3 0.956
1u1d 181Uridine phosphorylase 2.4.2.3 0.938
1u1g BBBUridine phosphorylase 2.4.2.3 0.841
1tgv 5UDUridine phosphorylase 2.4.2.3 0.722
4lzw THMUridine phosphorylase / 0.712
3euf BAUUridine phosphorylase 1 / 0.702
3p0f BAUUridine phosphorylase 2 2.4.2.3 0.695