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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1tkt H12 Gag-Pol polyprotein 2.7.7.49

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1tkt H12Gag-Pol polyprotein 2.7.7.49 1.153
1tl1 H18Gag-Pol polyprotein 2.7.7.49 0.931
1tkz H16Gag-Pol polyprotein 2.7.7.49 0.845
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1rt4 UC1Gag-Pol polyprotein 2.7.7.49 0.708
1tl3 H20Gag-Pol polyprotein 2.7.7.49 0.703
1s1t UC1Gag-Pol polyprotein 2.7.7.49 0.697
2vg5 NNCGag-Pol polyprotein 2.7.7.49 0.674
2ban 357Gag-Pol polyprotein 2.7.7.49 0.664
3meg T27Gag-Pol polyprotein 2.7.7.49 0.655
2rf2 MRXGag-Pol polyprotein 2.7.7.49 0.652
2vg7 NNIGag-Pol polyprotein 2.7.7.49 0.651
4ko0 JLJGag-Pol polyprotein 2.7.7.49 0.650