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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1til ATP Anti-sigma F factor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1til ATPAnti-sigma F factor / 1.148
1gjv AGS[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial 2.7.11.4 0.713
1i59 ANPChemotaxis protein CheA 2.7.13.3 0.685
4biw ANPSensor histidine kinase CpxA / 0.685
3sl2 ATPSensor histidine kinase WalK / 0.681
1nhh ANPDNA mismatch repair protein MutL / 0.675
1i5b ANPChemotaxis protein CheA 2.7.13.3 0.665
1th8 ADPAnti-sigma F factor / 0.663
1mx0 ANPType 2 DNA topoisomerase 6 subunit B / 0.656
2zkj ADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial 2.7.11.2 0.653
1zxm ANPDNA topoisomerase 2-alpha 5.99.1.3 0.651
4dxj 0M9Farnesyl pyrophosphate synthase / 0.650