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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1t4c COA Formyl-CoA:oxalate CoA-transferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1t4c COAFormyl-CoA:oxalate CoA-transferase / 1.219
2vjm COAFormyl-CoA:oxalate CoA-transferase / 0.870
3ubm COAFormyl-CoA:oxalate CoA-transferase / 0.789
1vgq CAOFormyl-CoA:oxalate CoA-transferase / 0.766
1t3z CAOFormyl-CoA:oxalate CoA-transferase / 0.736
3ics COACoenzyme A disulfide reductase / 0.681
1xvv CCQL-carnitine CoA-transferase / 0.656
1s1r NAPAldo-keto reductase family 1 member C3 / 0.654
1q6y COAFormyl-CoA:oxalate CoA-transferase / 0.652
1qmf KEFPenicillin-binding protein 2x / 0.652