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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1rye NDP Glucose--fructose oxidoreductase 1.1.99.28

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1rye NDPGlucose--fructose oxidoreductase 1.1.99.28 1.464
1h6b NDPGlucose--fructose oxidoreductase 1.1.99.28 1.029
1ofg NDPGlucose--fructose oxidoreductase 1.1.99.28 0.946
1ryd NDPGlucose--fructose oxidoreductase 1.1.99.28 0.943
1h6d NDPGlucose--fructose oxidoreductase 1.1.99.28 0.941
1h6a NDPGlucose--fructose oxidoreductase 1.1.99.28 0.904
5a04 NDPGlucose-fructose oxidoreductase / 0.842
1h6c NDPGlucose--fructose oxidoreductase 1.1.99.28 0.827
1evj NADGlucose--fructose oxidoreductase 1.1.99.28 0.808
5a03 NDPGlucose-fructose oxidoreductase / 0.799
5a06 NDPGlucose-fructose oxidoreductase / 0.798
5a02 NAPGlucose-fructose oxidoreductase / 0.788
1zh8 NAPUncharacterized protein / 0.777
5a05 NDPGlucose-fructose oxidoreductase / 0.746
3rbv NAPSugar 3-ketoreductase / 0.706
1yqd NAPSinapyl alcohol dehydrogenase / 0.688
3o9z NADLipopolysaccaride biosynthesis protein wbpB / 0.683
1yqx NAPSinapyl alcohol dehydrogenase / 0.682
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.668
2ixa NADAlpha-N-acetylgalactosaminidase 3.2.1.49 0.655
3pef NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.653
3adp NAILambda-crystallin 1.1.1.45 0.652