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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1rp4 FAD Endoplasmic oxidoreductin-1 1.8.4

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1rp4 FADEndoplasmic oxidoreductin-1 1.8.4 1.212
3m31 FADEndoplasmic oxidoreductin-1 1.8.4 1.181
1rq1 FADEndoplasmic oxidoreductin-1 1.8.4 0.875
3qzy FADFAD-linked sulfhydryl oxidase / 0.752
1jra FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 0.745
1jr8 FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 0.737
3u2m FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.708
1oqc FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.696
3tk0 FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.696
3ust FADAcMNPV orf92 / 0.694
2hj3 FADFAD-linked sulfhydryl oxidase ERV1 / 0.691
3gwl FADFAD-linked sulfhydryl oxidase 1.8.3.2 0.687
3mbg FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.682
3w4y FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.676
4kuo RBFPutative blue-light photoreceptor / 0.670
3lli FADSulfhydryl oxidase 1 1.8.3.2 0.656
5j3w FMNSensory box protein / 0.652
2q0k FADThioredoxin reductase 1.8.1.9 0.651
3r7c FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.650