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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1qz5 ATP Actin, alpha skeletal muscle

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1qz5 ATPActin, alpha skeletal muscle / 1.214
1s22 ATPActin, alpha skeletal muscle / 1.176
4k41 ATPActin, alpha skeletal muscle / 1.175
1t44 ATPActin, alpha skeletal muscle / 1.173
4b1v ATPActin, alpha skeletal muscle / 1.165
4pkg ATPActin, alpha skeletal muscle / 1.160
1c0f ATPMajor actin / 1.133
1wua ATPActin, alpha skeletal muscle / 1.131
1dej ATPMajor actin / 1.120
3a5o ATPMajor actin / 1.117
3m6g ATPActin, alpha skeletal muscle / 1.096
4pki ATPActin, alpha skeletal muscle / 1.093
4pl8 ATPActin, alpha skeletal muscle / 1.089
2q36 ATPActin, alpha skeletal muscle / 1.088
3w3d ATPActin, gamma-enteric smooth muscle / 1.078
1kxp ATPActin, alpha skeletal muscle / 1.067
3m1f ATPActin, alpha skeletal muscle / 1.067
3mn9 ATPActin-5C / 1.067
1eqy ATPActin, alpha skeletal muscle / 1.055
3chw ATPMajor actin / 1.052
3mn6 ATPActin-5C / 1.050
3eks ATPActin-5C / 1.049
1nlv ATPMajor actin / 1.048
2v51 ATPActin, alpha skeletal muscle / 1.040
5ce3 ATPActin / 1.035
3ffk ATPActin, alpha skeletal muscle / 1.033
3eku ATPActin-5C / 1.031
2a41 ATPActin, alpha skeletal muscle / 1.029
3mn7 ATPActin-5C / 1.028
4cbx ATPActin-2 / 1.017
2q97 ATPActin, alpha skeletal muscle / 1.016
3tu5 ATPActin, alpha skeletal muscle / 1.008
1mdu ATPActin, alpha skeletal muscle / 0.997
3daw ATPActin, alpha skeletal muscle / 0.991
1rgi ATPActin, alpha skeletal muscle / 0.986
2p9k ATPActin-related protein 2 / 0.958
3el2 ATPActin-5C / 0.949
1atn ATPActin, alpha skeletal muscle / 0.947
4ci6 ATPActin / 0.942
2oan ATPActin, cytoplasmic 1 / 0.941
4pkh ADPActin, alpha skeletal muscle / 0.939
1lot ATPActin, alpha skeletal muscle / 0.921
1h1v ATPActin, alpha skeletal muscle / 0.893
3wt0 ATPCell division protein FtsA / 0.888
4k42 ADPActin, alpha skeletal muscle / 0.863
4m63 ATPActin-5C / 0.851
1ijj ATPActin, alpha skeletal muscle / 0.826
1rfq ATPActin, alpha skeletal muscle / 0.812
4ehu ANP2-hydroxyisocaproyl-CoA dehydratase activator / 0.810
3d2e ATPHeat shock protein homolog SSE1 / 0.806
3a5m ATPMajor actin / 0.802
4eht ADP2-hydroxyisocaproyl-CoA dehydratase activator / 0.790
1yxq ATPActin, alpha skeletal muscle / 0.787
1nm1 ATPMajor actin / 0.785
4a62 ANPPlasmid segregation protein ParM / 0.785
1nmd ATPMajor actin / 0.764
3wqt ANPCell division protein FtsA / 0.763
2e2q ADPATP-dependent hexokinase / 0.753
3ule ATPActin-related protein 2 / 0.748
2d0o ADPDiol dehydratase-reactivating factor alpha subunit / 0.739
4brd ANPEctonucleoside triphosphate diphosphohydrolase I / 0.727
2qwl ADPHeat shock cognate 71 kDa protein / 0.725
4a61 ANPPlasmid segregation protein ParM / 0.725
4k43 ADPActin, alpha skeletal muscle / 0.722
5f1x ATP78 kDa glucose-regulated protein / 0.720
4brg GNPEctonucleoside triphosphate diphosphohydrolase I / 0.718
3ldo ANP78 kDa glucose-regulated protein / 0.709
1ngd ADPHeat shock cognate 71 kDa protein / 0.708
4bri UNPEctonucleoside triphosphate diphosphohydrolase I / 0.703
1ngi ANPHeat shock cognate 71 kDa protein / 0.700
2zgz GNPPlasmid segregation protein ParM / 0.698
4jhd ANPActin-5C / 0.697
1mwm ADPPlasmid segregation protein ParM / 0.693
2zgy GDPPlasmid segregation protein ParM / 0.691
3ldl ATP78 kDa glucose-regulated protein / 0.691
2pz8 APCNH(3)-dependent NAD(+) synthetase / 0.677
1nge ATPHeat shock cognate 71 kDa protein / 0.676
4xjc TTPdCTP deaminase / 0.674
2a84 ATPPantothenate synthetase 6.3.2.1 0.670
4bqz GNPEctonucleoside triphosphate diphosphohydrolase 2 / 0.670
3ryh GTPTubulin alpha chain / 0.667
3u4l ATPActin, cytoplasmic 1 / 0.667
1sxj AGSReplication factor C subunit 1 / 0.666
4yj2 GTPTubulin alpha-1B chain / 0.666
4pxz CLRP2Y purinoceptor 12 / 0.665
4du6 GTPGTP cyclohydrolase 1 / 0.662
1rqj RISFarnesyl diphosphate synthase 2.5.1.10 0.661
3kji ADPCO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC / 0.661
4fvq ATPTyrosine-protein kinase JAK2 / 0.661
5itz GTPTubulin alpha-1B chain / 0.660
1sxj ADPReplication factor C subunit 5 / 0.659
4o4d ATPKinase / 0.659
2fsn ADPArchaeal actin homolog / 0.657
3wqu ATPCell division protein FtsA / 0.657
2qwn ADPHeat shock cognate 71 kDa protein / 0.655
4ymv ATPABC-type polar amino acid transport system, ATPase component / 0.654
1mb9 ATPCarboxyethyl-arginine beta-lactam-synthase 6.3.3.4 0.653
4xjx ATPType I restriction enzyme EcoR124II R protein 3.1.21.3 0.653
3hsc ADPHeat shock cognate 71 kDa protein / 0.652
4a2b AGSCell division protein FtsA / 0.652
4dxj 0M9Farnesyl pyrophosphate synthase / 0.651
4gvz ADPArginine kinase 2.7.3.3 0.650