3.000 Å
X-ray
2015-03-07
Name: | ABC-type polar amino acid transport system, ATPase component |
---|---|
ID: | Q8RCC2_CALS4 |
AC: | Q8RCC2 |
Organism: | Caldanaerobacter subterraneus subsp. tengcongensis |
Reign: | Bacteria |
TaxID: | 273068 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 11 % |
J | 89 % |
B-Factor: | 70.124 |
---|---|
Number of residues: | 27 |
Including | |
Standard Amino Acids: | 27 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.195 | 1360.125 |
% Hydrophobic | % Polar |
---|---|
29.28 | 70.72 |
According to VolSite |
HET Code: | ATP |
---|---|
Formula: | C10H12N5O13P3 |
Molecular weight: | 503.149 g/mol |
DrugBank ID: | DB00171 |
Buried Surface Area: | 49.59 % |
Polar Surface area: | 319.88 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 17 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
-20.722 | 34.3729 | 15.6786 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
DuAr | DuAr | PHE- 11 | 3.95 | 0 | Aromatic Face/Face |
C5' | CG1 | VAL- 16 | 4.5 | 0 | Hydrophobic |
O2B | OG | SER- 36 | 3.29 | 125.22 | H-Bond (Protein Donor) |
O1B | N | GLY- 37 | 3.44 | 120.8 | H-Bond (Protein Donor) |
O3A | N | GLY- 37 | 2.83 | 171.64 | H-Bond (Protein Donor) |
O1A | N | GLY- 39 | 2.89 | 150.96 | H-Bond (Protein Donor) |
O2G | NZ | LYS- 40 | 3.89 | 0 | Ionic (Protein Cationic) |
O2B | NZ | LYS- 40 | 3.76 | 0 | Ionic (Protein Cationic) |
O1A | NZ | LYS- 40 | 3.74 | 0 | Ionic (Protein Cationic) |
O2A | NZ | LYS- 40 | 2.54 | 0 | Ionic (Protein Cationic) |
O1A | N | LYS- 40 | 3.49 | 143.19 | H-Bond (Protein Donor) |
O2A | NZ | LYS- 40 | 2.54 | 137.79 | H-Bond (Protein Donor) |
O3G | OG | SER- 41 | 2.62 | 148.89 | H-Bond (Protein Donor) |
O5' | N | SER- 41 | 3.12 | 170.86 | H-Bond (Protein Donor) |
C3' | CB | SER- 41 | 3.93 | 0 | Hydrophobic |
O2G | NE2 | HIS- 194 | 3.14 | 139.63 | H-Bond (Protein Donor) |