3.000 Å
X-ray
2015-03-07
| Name: | ABC-type polar amino acid transport system, ATPase component |
|---|---|
| ID: | Q8RCC2_CALS4 |
| AC: | Q8RCC2 |
| Organism: | Caldanaerobacter subterraneus subsp. tengcongensis |
| Reign: | Bacteria |
| TaxID: | 273068 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 11 % |
| J | 89 % |
| B-Factor: | 70.124 |
|---|---|
| Number of residues: | 27 |
| Including | |
| Standard Amino Acids: | 27 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.195 | 1360.125 |
| % Hydrophobic | % Polar |
|---|---|
| 29.28 | 70.72 |
| According to VolSite | |

| HET Code: | ATP |
|---|---|
| Formula: | C10H12N5O13P3 |
| Molecular weight: | 503.149 g/mol |
| DrugBank ID: | DB00171 |
| Buried Surface Area: | 49.59 % |
| Polar Surface area: | 319.88 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 17 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| -20.722 | 34.3729 | 15.6786 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| DuAr | DuAr | PHE- 11 | 3.95 | 0 | Aromatic Face/Face |
| C5' | CG1 | VAL- 16 | 4.5 | 0 | Hydrophobic |
| O2B | OG | SER- 36 | 3.29 | 125.22 | H-Bond (Protein Donor) |
| O1B | N | GLY- 37 | 3.44 | 120.8 | H-Bond (Protein Donor) |
| O3A | N | GLY- 37 | 2.83 | 171.64 | H-Bond (Protein Donor) |
| O1A | N | GLY- 39 | 2.89 | 150.96 | H-Bond (Protein Donor) |
| O2G | NZ | LYS- 40 | 3.89 | 0 | Ionic (Protein Cationic) |
| O2B | NZ | LYS- 40 | 3.76 | 0 | Ionic (Protein Cationic) |
| O1A | NZ | LYS- 40 | 3.74 | 0 | Ionic (Protein Cationic) |
| O2A | NZ | LYS- 40 | 2.54 | 0 | Ionic (Protein Cationic) |
| O1A | N | LYS- 40 | 3.49 | 143.19 | H-Bond (Protein Donor) |
| O2A | NZ | LYS- 40 | 2.54 | 137.79 | H-Bond (Protein Donor) |
| O3G | OG | SER- 41 | 2.62 | 148.89 | H-Bond (Protein Donor) |
| O5' | N | SER- 41 | 3.12 | 170.86 | H-Bond (Protein Donor) |
| C3' | CB | SER- 41 | 3.93 | 0 | Hydrophobic |
| O2G | NE2 | HIS- 194 | 3.14 | 139.63 | H-Bond (Protein Donor) |