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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ymv ATP ABC-type polar amino acid transport system, ATPase component

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ymv ATPABC-type polar amino acid transport system, ATPase component / 0.995
1mwm ADPPlasmid segregation protein ParM / 0.655
1qz5 ATPActin, alpha skeletal muscle / 0.654
1s22 ATPActin, alpha skeletal muscle / 0.654
4k41 ATPActin, alpha skeletal muscle / 0.654
4pki ATPActin, alpha skeletal muscle / 0.654
1c0f ATPMajor actin / 0.653
1kxp ATPActin, alpha skeletal muscle / 0.653
1rfq ATPActin, alpha skeletal muscle / 0.653
2q36 ATPActin, alpha skeletal muscle / 0.653
4pkg ATPActin, alpha skeletal muscle / 0.653
1t44 ATPActin, alpha skeletal muscle / 0.652
3ffk ATPActin, alpha skeletal muscle / 0.651