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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1qrr UPG UDP-sulfoquinovose synthase, chloroplastic 3.13.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1qrr UPGUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 1.504
1i24 UPGUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 1.465
1i2c UPGUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 1.425
4zu4 4TGWxcM-like protein / 0.700
1ek6 UPGUDP-glucose 4-epimerase / 0.694
1n7h GDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.691
1i3n UD1UDP-glucose 4-epimerase / 0.688
1a9z UPGUDP-glucose 4-epimerase 5.1.3.2 0.681
1wvg CXYCDP-glucose 4,6-dehydratase 4.2.1.45 0.667
4hmz 18TdTDP-4-dehydro-6-deoxyglucose 3-epimerase 5.1.3.27 0.661
1z7e UGABifunctional polymyxin resistance protein ArnA / 0.658
1a9y UPGUDP-glucose 4-epimerase 5.1.3.2 0.657
2jcs TTPDeoxynucleoside kinase / 0.655
2udp UPPUDP-glucose 4-epimerase 5.1.3.2 0.654
4lis UPGUDP-glucose 4-epimerase (Eurofung) / 0.654
2pkm ADNAdenosine kinase 2.7.1.20 0.652