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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1qlh NAD Alcohol dehydrogenase E chain 1.1.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1qlh NADAlcohol dehydrogenase E chain 1.1.1.1 1.072
1cdo NADAlcohol dehydrogenase 1 1.1.1.1 0.759
4dl9 NADS-(hydroxymethyl)glutathione dehydrogenase / 0.739
3uko NADAlcohol dehydrogenase class-3 / 0.724
4dlb NADS-(hydroxymethyl)glutathione dehydrogenase / 0.690
4l0q NADAlcohol dehydrogenase class-3 / 0.688
3wle NAD(R)-specific carbonyl reductase / 0.671
1pl6 NADSorbitol dehydrogenase 1.1.1.14 0.658
4rtj SFGDNA adenine methylase 2.1.1.72 0.655
4rtm SAMDNA adenine methylase 2.1.1.72 0.655
2j3i NAPNADPH-dependent oxidoreductase 2-alkenal reductase 1.3.1.74 0.654
1axe NADAlcohol dehydrogenase E chain 1.1.1.1 0.650
1hdz NADAlcohol dehydrogenase 1B 1.1.1.1 0.650
2ohx NADAlcohol dehydrogenase E chain 1.1.1.1 0.650