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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1qkn RAL Estrogen receptor beta

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1qkn RALEstrogen receptor beta / 1.272
1err RALEstrogen receptor / 0.927
2jfa RALEstrogen receptor / 0.904
1yim CM4Estrogen receptor / 0.750
4e5i 0N9Polymerase acidic protein / 0.744
1xpc AITEstrogen receptor / 0.725
2gpu OHTEstrogen-related receptor gamma / 0.715
2ayr L4GEstrogen receptor / 0.698
2p7z OHTEstrogen-related receptor gamma / 0.697
1xqc AEJEstrogen receptor / 0.690
1l2i ETCEstrogen receptor / 0.686
3ols ESTEstrogen receptor beta / 0.686
1xp6 AIUEstrogen receptor / 0.678
1xp9 AIJEstrogen receptor / 0.677
2bj4 OHTEstrogen receptor / 0.673
4ivw 1GJEstrogen receptor / 0.672
1sj0 E4DEstrogen receptor / 0.670
1yin CM3Estrogen receptor / 0.665
2q70 DC8Estrogen receptor / 0.663
2ouz C3DEstrogen receptor / 0.662
4e5f 0N7Polymerase acidic protein / 0.660
4iw6 1GUEstrogen receptor / 0.656
1s9q OHTEstrogen-related receptor gamma / 0.651
1xp1 AIHEstrogen receptor / 0.650