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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1qgz FAD Ferredoxin--NADP reductase 1.18.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1qgz FADFerredoxin--NADP reductase 1.18.1.2 1.329
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 1.237
1e63 FADFerredoxin--NADP reductase 1.18.1.2 1.235
1h85 FADFerredoxin--NADP reductase 1.18.1.2 1.230
1bjk FADFerredoxin--NADP reductase 1.18.1.2 1.215
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 1.207
1e62 FADFerredoxin--NADP reductase 1.18.1.2 1.197
1go2 FADFerredoxin--NADP reductase 1.18.1.2 1.189
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.179
1e64 FADFerredoxin--NADP reductase 1.18.1.2 1.172
1b2r FADFerredoxin--NADP reductase 1.18.1.2 1.168
1que FADFerredoxin--NADP reductase 1.18.1.2 1.168
1ogi FADFerredoxin--NADP reductase 1.18.1.2 1.150
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.149
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.146
1qgy FADFerredoxin--NADP reductase 1.18.1.2 1.131
3vo2 FADFerredoxin--NADP reductase / 1.131
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 1.131
2b5o FADFerredoxin--NADP reductase 1.18.1.2 1.128
1ogj FADFerredoxin--NADP reductase 1.18.1.2 1.120
1gjr FADFerredoxin--NADP reductase 1.18.1.2 1.114
4bpr FADFerredoxin--NADP reductase 1.18.1.2 1.112
1gaw FADFerredoxin / 1.110
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.105
1h42 FADFerredoxin--NADP reductase 1.18.1.2 1.104
3zbt FADFerredoxin--NADP reductase 1.18.1.2 1.098
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.095
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.091
4c43 FADFerredoxin--NADP reductase 1.18.1.2 1.085
3w5u FADFerredoxin / 1.074
1w35 FADFerredoxin--NADP reductase 1.18.1.2 1.071
1gaq FADFerredoxin / 1.056
1w34 FADFerredoxin--NADP reductase 1.18.1.2 1.056
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.051
2vyq FADFerredoxin--NADP reductase 1.18.1.2 1.039
2rc5 FADFerredoxin--NADP reductase / 1.016
2rc6 FADFerredoxin--NADP reductase / 0.996
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.991
3qfs FADNADPH--cytochrome P450 reductase / 0.987
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.977
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.972
3qfc FADNADPH--cytochrome P450 reductase / 0.965
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.949
1sm4 FADFerredoxin--NADP reductase / 0.945
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.943
1ewy FADFerredoxin--NADP reductase 1.18.1.2 0.940
4yaf FADNADPH--cytochrome P450 reductase / 0.921
1ja1 FADNADPH--cytochrome P450 reductase / 0.905
1ja0 FADNADPH--cytochrome P450 reductase / 0.894
4y9u FADNADPH--cytochrome P450 reductase / 0.892
3qft FADNADPH--cytochrome P450 reductase / 0.891
4y9r FADNADPH--cytochrome P450 reductase / 0.891
3qfr FADNADPH--cytochrome P450 reductase / 0.890
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.890
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.883
3qe2 FADNADPH--cytochrome P450 reductase / 0.881
1tll FADNitric oxide synthase, brain 1.14.13.39 0.876
1cqx FADFlavohemoprotein / 0.869
1amo FADNADPH--cytochrome P450 reductase / 0.866
4yau FADNADPH--cytochrome P450 reductase / 0.864
3ojw FADNADPH--cytochrome P450 reductase / 0.844
1j9z FADNADPH--cytochrome P450 reductase / 0.839
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.833
3fpk FADFerredoxin-NADP reductase / 0.822
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.818
2eix FADNADH-cytochrome b5 reductase / 0.815
3ojx FADNADPH--cytochrome P450 reductase / 0.810
4y7c FADNADPH--cytochrome P450 reductase / 0.803
4yao FADNADPH--cytochrome P450 reductase / 0.786
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.783
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.783
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.779
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.777
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.773
2bf4 FADNADPH--cytochrome P450 reductase / 0.764
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.762
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.756
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.751
2bn4 FADNADPH--cytochrome P450 reductase / 0.741
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.741
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.738
1gvh FADFlavohemoprotein / 0.732
2gpj FADSiderophore-interacting protein / 0.732
2vnh FADNADPH:ferredoxin reductase / 0.720
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.703
2pia FMNPhthalate dioxygenase reductase / 0.702
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.694
4hmw FMNPyridoxamine 5'-phosphate oxidase / 0.692
4k1x FADNADPH:ferredoxin reductase / 0.690
4z2t FAD2-hydroxybiphenyl-3-monooxygenase / 0.686
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.685
3a20 FMNFMN-binding protein / 0.685
1cnf FADNitrate reductase [NADH] 1.7.1.1 0.680
3pl8 FADPyranose 2-oxidase / 0.680
2hq9 FADMll6688 protein / 0.668
2bpo FADNADPH--cytochrome P450 reductase / 0.667
1wlk FMNFMN-binding protein / 0.665
2e83 FMNFMN-binding protein / 0.665
2iml FMNUncharacterized protein / 0.664
3a6r FMNFMN-binding protein / 0.660
3ka7 FADPutative oxidoreductase / 0.660
4hmx FMNPyridoxamine 5'-phosphate oxidase / 0.659
4eet FMNPhototropin-2 2.7.11.1 0.658
1uum FMNDihydroorotate dehydrogenase (quinone), mitochondrial 1.3.5.2 0.657
2pr5 FMNBlue-light photoreceptor / 0.657
3awh FMNFMN-binding protein / 0.657
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.655
3a6q FMNFMN-binding protein / 0.653
3r5y F42Uncharacterized protein / 0.653
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.652
3vy2 FMNFMN-binding protein / 0.652