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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1q3a NGH Stromelysin-2 3.4.24.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1q3a NGHStromelysin-2 3.4.24.22 1.002
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3oho Z79Stromelysin-1 3.4.24.17 0.699
3kry 3KRCollagenase 3 3.4.24 0.692
4g9l NGHStromelysin-1 3.4.24.17 0.688
1d8f SPIStromelysin-1 3.4.24.17 0.674
2w0d CGSMacrophage metalloelastase 3.4.24.65 0.672
1d7x SPCStromelysin-1 3.4.24.17 0.662
1g49 111Stromelysin-1 3.4.24.17 0.659
2yig 5ELCollagenase 3 3.4.24 0.655