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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1pz1 NAP General stress protein 69

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1pz1 NAPGeneral stress protein 69 / 1.390
4ijr NDPD-arabinose dehydrogenase [NAD(P)+] heavy chain 1.1.1.117 0.766
1ads NAPAldose reductase 1.1.1.21 0.758
4jta NAPVoltage-gated potassium channel subunit beta-2 / 0.753
2clp NDPAflatoxin B1 aldehyde reductase member 3 / 0.749
3lnm NAPVoltage-gated potassium channel subunit beta-2 / 0.741
2r9r NAPVoltage-gated potassium channel subunit beta-2 / 0.739
2fvl NAPAldo-keto reductase family 1 member C4 1.1.1.225 0.736
1lqa NDPProtein tas / 0.717
2hej NDPAldo-keto reductase family 1 member C21 1.1.1 0.698
4h8n NDPNADPH-dependent conjugated polyketone reductase C2 / 0.697
3ln3 NADAldo-keto reductase family 1 member C13 / 0.685
1sm9 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.680
2he5 NDPAldo-keto reductase family 1 member C21 1.1.1 0.677
3lut NAPVoltage-gated potassium channel subunit beta-2 / 0.670
1hqt NAPAlcohol dehydrogenase [NADP(+)] 1.1.1.2 0.669
1gve NAPAflatoxin B1 aldehyde reductase member 3 1 0.659
2c91 NAPAflatoxin B1 aldehyde reductase member 2 / 0.657
4aub NAPL-glyceraldehyde 3-phosphate reductase 1.1.1 0.655
1ye4 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.654
1m9h NAD2,5-diketo-D-gluconic acid reductase A 1.1.1.346 0.652