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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1pno NAP NAD(P) transhydrogenase subunit beta 1.6.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1pno NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 1.456
1pnq NDPNAD(P) transhydrogenase subunit beta 1.6.1.2 1.163
1d4o NAPNAD(P) transhydrogenase, mitochondrial / 1.114
4j16 NAPNAD(P) transhydrogenase subunit beta / 1.113
1nm5 NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 1.101
1u31 NDPNAD(P) transhydrogenase, mitochondrial 1.6.1.2 1.095
1pt9 TAPNAD(P) transhydrogenase, mitochondrial 1.6.1.2 1.077
2fsv NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 1.065
4j1t NAPNAD(P) transhydrogenase subunit beta / 1.062
1djl NAPNAD(P) transhydrogenase, mitochondrial 1.6.1.2 1.037
1u28 NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.976
1hzz NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.971
2fr8 NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.853
1ptj NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.741
2jah NDPClavaldehyde dehydrogenase / 0.738
4tqg NDPPutative dTDP-d-glucose 4 6-dehydratase / 0.697
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.692
3mje NDPAmphB / 0.683
1yc2 APRNAD-dependent protein deacylase 2 / 0.680
1s7g APRNAD-dependent protein deacylase 2 / 0.672
4qed NAPElxO / 0.672
1qo8 FADFumarate reductase flavoprotein subunit / 0.657
1n3s GTPGTP cyclohydrolase 1 3.5.4.16 0.655
5d2e NAPMlnE / 0.655
4dxj 0M9Farnesyl pyrophosphate synthase / 0.653
2py7 ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.652
4dwb 0M7Farnesyl pyrophosphate synthase / 0.652
4ga3 4GAFarnesyl pyrophosphate synthase 2.5.1.10 0.652