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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1okn STB Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1okn STBCarbonic anhydrase 2 4.2.1.1 0.861
1okm SABCarbonic anhydrase 2 4.2.1.1 0.773
3rz8 RZ8Carbonic anhydrase 2 4.2.1.1 0.764
1cny EG3Carbonic anhydrase 2 4.2.1.1 0.762
1cnw EG1Carbonic anhydrase 2 4.2.1.1 0.755
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.750
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.747
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.743
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.741
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.741
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.740
1if8 SBSCarbonic anhydrase 2 4.2.1.1 0.736
3s8x E59Carbonic anhydrase 2 4.2.1.1 0.734
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.732
3n2p AYXCarbonic anhydrase 2 4.2.1.1 0.729
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.727
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.727
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.726
3eft 3BSCarbonic anhydrase 2 4.2.1.1 0.726
3mho J43Carbonic anhydrase 2 4.2.1.1 0.726
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.726
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.724
3m2n J74Carbonic anhydrase 2 4.2.1.1 0.723
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.722
4uov AZMCarbonate dehydratase / 0.721
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.720
4itp 1GDCarbonic anhydrase 2 4.2.1.1 0.720
2q1q OSPCarbonic anhydrase 2 4.2.1.1 0.719
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.719
3m5e JDRCarbonic anhydrase 2 4.2.1.1 0.719
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.717
3mhl J71Carbonic anhydrase 2 4.2.1.1 0.716
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.714
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.713
3bl1 BL1Carbonic anhydrase 2 4.2.1.1 0.712
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.712
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.710
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.710
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.709
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.706
4dz7 D02Carbonic anhydrase 2 4.2.1.1 0.705
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.702
3mhc ARZCarbonic anhydrase 2 4.2.1.1 0.698
4kap 1QVCarbonic anhydrase 2 4.2.1.1 0.698
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.698
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.697
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.697
1bnv AL7Carbonic anhydrase 2 4.2.1.1 0.695
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.694
1if5 FBTCarbonic anhydrase 2 4.2.1.1 0.692
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.692
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.692
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.691
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.691
3oys OYSCarbonic anhydrase 2 4.2.1.1 0.690
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.689
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.689
1bn1 AL5Carbonic anhydrase 2 4.2.1.1 0.687
1bnm AL8Carbonic anhydrase 2 4.2.1.1 0.685
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.685
1bnq AL4Carbonic anhydrase 2 4.2.1.1 0.684
4kni E1ECarbonic anhydrase 2 4.2.1.1 0.682
2nmx M25Carbonic anhydrase 1 4.2.1.1 0.681
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.679
3k2f NKXCarbonic anhydrase 2 4.2.1.1 0.679
1i8z INLCarbonic anhydrase 2 4.2.1.1 0.677
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.676
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.674
3f7u AG4Carbonic anhydrase 4 4.2.1.1 0.674
4xiw AZMCarbonic anhydrase, alpha type / 0.674
1bn3 AL6Carbonic anhydrase 2 4.2.1.1 0.673
3dd8 2C7Carbonic anhydrase 2 4.2.1.1 0.673
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.672
3f4x KLTCarbonic anhydrase 2 4.2.1.1 0.667
3f7b AG5Carbonic anhydrase 4 4.2.1.1 0.667
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.667
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.666
3m2y BE0Carbonic anhydrase 2 4.2.1.1 0.665
1bn4 AL9Carbonic anhydrase 2 4.2.1.1 0.664
1xpz 4TZCarbonic anhydrase 2 4.2.1.1 0.657
1i90 INMCarbonic anhydrase 2 4.2.1.1 0.656
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.656
4kp5 E1FCarbonic anhydrase 12 4.2.1.1 0.656
2nn7 M29Carbonic anhydrase 1 4.2.1.1 0.655
5fl4 9FKCarbonic anhydrase 9 4.2.1.1 0.655
1bnn AL1Carbonic anhydrase 2 4.2.1.1 0.654
1i9p IOECarbonic anhydrase 2 4.2.1.1 0.654
3ml2 SU0Carbonic anhydrase 2 4.2.1.1 0.654
3oy0 OY0Carbonic anhydrase 2 4.2.1.1 0.654
3sax E50Carbonic anhydrase 2 4.2.1.1 0.654
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.653
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.653
1g54 FFBCarbonic anhydrase 2 4.2.1.1 0.652
4bf1 9FKCarbonic anhydrase 2 4.2.1.1 0.651
4e5i 0N9Polymerase acidic protein / 0.651