Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1nzy BCA 4-chlorobenzoyl coenzyme A dehalogenase 3.8.1.7

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1nzy BCA4-chlorobenzoyl coenzyme A dehalogenase 3.8.1.7 1.385
1jxz BCA4-chlorobenzoyl coenzyme A dehalogenase 3.8.1.7 1.377
4qij 1HA1,4-dihydroxy-2-naphthoyl-CoA synthase / 0.865
4qii 2NE1,4-dihydroxy-2-naphthoyl-CoA synthase / 0.835
3t88 S0N1,4-dihydroxy-2-naphthoyl-CoA synthase / 0.821
4i4z 2NE1,4-dihydroxy-2-naphthoyl-CoA synthase / 0.809
4i42 1HA1,4-dihydroxy-2-naphthoyl-CoA synthase / 0.798
1q51 CAA1,4-dihydroxy-2-naphthoyl-CoA synthase / 0.728
4i52 1HA1,4-dihydroxy-2-naphthoyl-CoA synthase / 0.727
2np9 YE1(3,5-dihydroxyphenyl)acetyl-CoA 1,2-dioxygenase / 0.715
1dub CAAEnoyl-CoA hydratase, mitochondrial 4.2.1.17 0.702
1sg4 CO8Enoyl-CoA delta isomerase 1, mitochondrial 5.3.3.8 0.697
4ylh YE1(3,5-dihydroxyphenyl)acetyl-CoA 1,2-dioxygenase / 0.686
3glm COOGlutaconyl-CoA decarboxylase alpha subunit / 0.680
4h3p ANPMitogen-activated protein kinase 1 2.7.11.24 0.659
1ey3 DAKEnoyl-CoA hydratase, mitochondrial 4.2.1.17 0.658
1mj3 HXCEnoyl-CoA hydratase, mitochondrial 4.2.1.17 0.658