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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1nsy ATP NH(3)-dependent NAD(+) synthetase 6.3.1.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1nsy ATPNH(3)-dependent NAD(+) synthetase 6.3.1.5 0.858
1kqp ADJNH(3)-dependent NAD(+) synthetase 6.3.1.5 0.720
1ee1 DNDNH(3)-dependent NAD(+) synthetase 6.3.1.5 0.691
4guk P2GNeuronal calcium sensor 1 / 0.675
1ifx DNDNH(3)-dependent NAD(+) synthetase 6.3.1.5 0.671
1m67 BOAGlycerol-3-phosphate dehydrogenase [NAD(+)], glycosomal 1.1.1.8 0.656
1xng DNDNH(3)-dependent NAD(+) synthetase 6.3.1.5 0.654
2gyw OBIAcetylcholinesterase 3.1.1.7 0.654
2yeg XQGHeat shock protein HSP 90-alpha / 0.654
4ahv Z5PGag-Pol polyprotein / 0.654
2a3b CFFEndochitinase B1 3.2.1.14 0.650