2.000 Å
X-ray
1996-07-22
| Name: | NH(3)-dependent NAD(+) synthetase |
|---|---|
| ID: | NADE_BACSU |
| AC: | P08164 |
| Organism: | Bacillus subtilis |
| Reign: | Bacteria |
| TaxID: | 224308 |
| EC Number: | 6.3.1.5 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 35 % |
| B | 65 % |
| B-Factor: | 22.552 |
|---|---|
| Number of residues: | 31 |
| Including | |
| Standard Amino Acids: | 31 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.879 | 722.250 |
| % Hydrophobic | % Polar |
|---|---|
| 45.33 | 54.67 |
| According to VolSite | |

| HET Code: | ATP |
|---|---|
| Formula: | C10H12N5O13P3 |
| Molecular weight: | 503.149 g/mol |
| DrugBank ID: | DB00171 |
| Buried Surface Area: | 48 % |
| Polar Surface area: | 319.88 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 17 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| -2.00368 | 68.8756 | 33.9777 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| N1 | OH | TYR- 32 | 2.58 | 171.19 | H-Bond (Protein Donor) |
| O2B | ND2 | ASN- 133 | 3.27 | 132.16 | H-Bond (Protein Donor) |
| C2' | CD2 | LEU- 153 | 4.01 | 0 | Hydrophobic |
| O2' | OD2 | ASP- 177 | 2.54 | 156.89 | H-Bond (Ligand Donor) |
| DuAr | DuAr | HIS- 257 | 3.55 | 0 | Aromatic Face/Face |
| O1G | NZ | LYS- 258 | 3.56 | 0 | Ionic (Protein Cationic) |
| O2A | NZ | LYS- 258 | 3.23 | 0 | Ionic (Protein Cationic) |
| O3A | NZ | LYS- 258 | 2.7 | 151.87 | H-Bond (Protein Donor) |