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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1nm5 NAP NAD(P) transhydrogenase subunit beta 1.6.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1nm5 NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 1.422
4j16 NAPNAD(P) transhydrogenase subunit beta / 1.120
1d4o NAPNAD(P) transhydrogenase, mitochondrial / 1.111
1pno NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 1.101
4j1t NAPNAD(P) transhydrogenase subunit beta / 1.085
1u28 NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 1.083
2fr8 NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 1.073
1djl NAPNAD(P) transhydrogenase, mitochondrial 1.6.1.2 1.042
1u31 NDPNAD(P) transhydrogenase, mitochondrial 1.6.1.2 1.017
1pt9 TAPNAD(P) transhydrogenase, mitochondrial 1.6.1.2 0.967
1hzz NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.966
2fsv NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.900
1pnq NDPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.895
1ptj NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.820
1yc2 APRNAD-dependent protein deacylase 2 / 0.689
4l4x NDPAmphI / 0.684
2oby NAPQuinone oxidoreductase PIG3 1 0.668
2bzg SAHThiopurine S-methyltransferase 2.1.1.67 0.667
2yvg NADFerredoxin reductase / 0.666
3ai3 NDPNADPH-sorbose reductase / 0.666
3sju NDPKeto reductase / 0.665
4j7x NAPSepiapterin reductase 1.1.1.153 0.663
2pkk 2FAAdenosine kinase 2.7.1.20 0.661
3zg6 APRNAD-dependent protein deacetylase sirtuin-6 3.5.1 0.656
1s7g APRNAD-dependent protein deacylase 2 / 0.653
1boo SAHModification methylase PvuII 2.1.1.113 0.652
3clt FADElectron transfer flavoprotein subunit alpha / 0.652
3u4c NDPNADPH-dependent reductase BacG / 0.650