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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1n1e NDE Glycerol-3-phosphate dehydrogenase [NAD(+)], glycosomal 1.1.1.8

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1n1e NDEGlycerol-3-phosphate dehydrogenase [NAD(+)], glycosomal 1.1.1.8 1.606
3wfj NAD2-dehydropantoate 2-reductase / 0.670
3zhb NAPPutative dehydrogenase / 0.670
3pef NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.665
1yon A2R2-dehydropantoate 2-reductase 1.1.1.169 0.657
3cea NADMyo-inositol 2-dehydrogenase-like (Promiscuous) / 0.657
3nt6 COAFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.657
1il0 NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.656
4hib 16BUridine 5'-monophosphate synthase 4.1.1.23 0.655
3akn 11DFatty acid-binding protein, intestinal / 0.654