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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1mue CDD Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1mue CDDProthrombin 3.4.21.5 1.075
1sl3 170Prothrombin 3.4.21.5 0.987
1mu8 CDBProthrombin 3.4.21.5 0.910
1z71 L17Prothrombin 3.4.21.5 0.882
3c1k T15Prothrombin 3.4.21.5 0.882
1mu6 CDAProthrombin 3.4.21.5 0.873
1nm6 L86Prothrombin 3.4.21.5 0.827
2bxt C2DProthrombin 3.4.21.5 0.819
1nt1 T76Prothrombin 3.4.21.5 0.774
1ta2 176Prothrombin 3.4.21.5 0.767
2r2m I50Prothrombin 3.4.21.5 0.754
4e5i 0N9Polymerase acidic protein / 0.744
2zgb 21UProthrombin 3.4.21.5 0.739
4bah MELProthrombin 3.4.21.5 0.726
4bao MVFProthrombin 3.4.21.5 0.707
2zfq 45UProthrombin 3.4.21.5 0.706
3dhk 23UProthrombin 3.4.21.5 0.703
3qwc 98PProthrombin 3.4.21.5 0.703
3f68 91UProthrombin 3.4.21.5 0.702
2zg0 50UProthrombin 3.4.21.5 0.700
2znk 31UProthrombin 3.4.21.5 0.698
1ta6 177Prothrombin 3.4.21.5 0.693
4bak M67Prothrombin 3.4.21.5 0.690
3eq0 2TSProthrombin 3.4.21.5 0.688
4ban M6SProthrombin 3.4.21.5 0.688
4e7r 0NWProthrombin 3.4.21.5 0.686
4ax9 N5NProthrombin 3.4.21.5 0.684
1d9i 00PProthrombin 3.4.21.5 0.683
2zdv 37UProthrombin 3.4.21.5 0.683
5cmx 0G6Prothrombin 3.4.21.5 0.683
4bam MM9Prothrombin 3.4.21.5 0.682
3dux 64UProthrombin 3.4.21.5 0.681
1d6w 00RProthrombin 3.4.21.5 0.678
2zda 32UProthrombin 3.4.21.5 0.676
2zhq 27UProthrombin 3.4.21.5 0.676
4baq M4ZProthrombin 3.4.21.5 0.674
2zfp 19UProthrombin 3.4.21.5 0.673
1o0d 163Prothrombin 3.4.21.5 0.672
2zf0 51UProthrombin 3.4.21.5 0.672
1ypm RA4Prothrombin 3.4.21.5 0.670
2zc9 22UProthrombin 3.4.21.5 0.670
4ayv 9MQProthrombin 3.4.21.5 0.670
2zhe 13UProthrombin 3.4.21.5 0.663
1k22 MELProthrombin 3.4.21.5 0.662
2zhf 49UProthrombin 3.4.21.5 0.661
3c27 DKKProthrombin 3.4.21.5 0.661
4e5f 0N7Polymerase acidic protein / 0.660
4az2 9MUProthrombin 3.4.21.5 0.657
1ype UIPProthrombin 3.4.21.5 0.656