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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1m9t H4B Nitric oxide synthase, inducible 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1m9t H4BNitric oxide synthase, inducible 1.14.13.39 0.801
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1m8i H4BNitric oxide synthase, inducible 1.14.13.39 0.722
1m8h H4BNitric oxide synthase, inducible 1.14.13.39 0.717
3e6t H4BNitric oxide synthase, inducible 1.14.13.39 0.686
1m8d H4BNitric oxide synthase, inducible 1.14.13.39 0.678
1dwx H4BNitric oxide synthase, inducible 1.14.13.39 0.674
2g6i HBINitric oxide synthase, brain 1.14.13.39 0.664
1qw5 H4BNitric oxide synthase, inducible 1.14.13.39 0.661
2nod H4BNitric oxide synthase, inducible 1.14.13.39 0.660
3q99 H4BNitric oxide synthase, brain 1.14.13.39 0.656
4blt APCNTPase P4 / 0.656
4js9 H4BNitric oxide synthase, inducible 1.14.13.39 0.655
4fvy H4BNitric oxide synthase, brain 1.14.13.39 0.654
1p6j H4BNitric oxide synthase, brain 1.14.13.39 0.653
3nod H4BNitric oxide synthase, inducible 1.14.13.39 0.653
3jt4 H4BNitric oxide synthase, brain 1.14.13.39 0.652
3n5z H4BNitric oxide synthase, brain 1.14.13.39 0.652
3jta H4BNitric oxide synthase, brain 1.14.13.39 0.651
3q9a H4BNitric oxide synthase, brain 1.14.13.39 0.651
3e6o H4BNitric oxide synthase, inducible 1.14.13.39 0.650