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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1m9h NAD 2,5-diketo-D-gluconic acid reductase A 1.1.1.346

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1m9h NAD2,5-diketo-D-gluconic acid reductase A 1.1.1.346 1.206
1a80 NDP2,5-diketo-D-gluconic acid reductase A 1.1.1.346 0.967
4g5d NDPProstaglandin F synthase 1.1.1.188 0.878
4pmj NAPPutative oxidoreductase / 0.860
4xzn NAPAldo-keto reductase family 1 member B10 1.1.1 0.860
2j8t NAPAldose reductase 1.1.1.21 0.858
1z8a NAPAldose reductase 1.1.1.21 0.857
1ads NAPAldose reductase 1.1.1.21 0.854
3h7u NAPNADPH-dependent aldo-keto reductase, chloroplastic / 0.845
3q67 NAPAldose reductase 1.1.1.21 0.842
2pf8 NDPAldose reductase 1.1.1.21 0.841
5c7h NDPPutative oxidoreductase / 0.841
2iq0 NAPAldose reductase 1.1.1.21 0.839
1ah4 NAPAldose reductase 1.1.1.21 0.837
1x98 NAPAldose reductase 1.1.1.21 0.827
2pev NDPAldose reductase 1.1.1.21 0.826
2acs NAPAldose reductase 1.1.1.21 0.823
3v36 NAPAldose reductase 1.1.1.21 0.820
3o3r NAPAldose reductase-related protein 1 1.1.1.21 0.818
1k8c NAPNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.815
2acq NAPAldose reductase 1.1.1.21 0.800
2bgs NDPAldose reductase 1.1.1.21 0.798
3uzw NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.795
1x96 NAPAldose reductase 1.1.1.21 0.793
3dop NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.793
2pfh NDPAldose reductase 1.1.1.21 0.784
1sm9 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.782
2acu NAPAldose reductase 1.1.1.21 0.781
3h7r NAPAldo-keto reductase family 4 member C8 / 0.778
1r38 NAPNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.775
4xzm NAPAldo-keto reductase family 1 member B10 1.1.1 0.772
1zgd NAPChalcone reductase / 0.766
3g1r NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.764
4ijr NDPD-arabinose dehydrogenase [NAD(P)+] heavy chain 1.1.1.117 0.764
3bv7 NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.757
3q65 NAPAldose reductase 1.1.1.21 0.756
1q5m NDPProstaglandin-E(2) 9-reductase 1.1.1.189 0.751
1mi3 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.745
1vp5 NAPOxidoreductase, aldo/keto reductase family / 0.745
3buv NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.743
4jtq NAPAldo-keto reductase family 1 member C2 / 0.737
1ef3 NAPAldose reductase 1.1.1.21 0.736
3caq NDP3-oxo-5-beta-steroid 4-dehydrogenase / 0.731
4l1x NAPAldo-keto reductase family 1 member C2 / 0.729
1hqt NAPAlcohol dehydrogenase [NADP(+)] 1.1.1.2 0.728
3qkz NAPAldose reductase-related protein 1 1.1.1.21 0.725
4jta NAPVoltage-gated potassium channel subunit beta-2 / 0.722
4xo7 NAPAldo-keto reductase family 1 member C2 / 0.722
2r9r NAPVoltage-gated potassium channel subunit beta-2 / 0.721
1s1r NAPAldo-keto reductase family 1 member C3 / 0.715
3lut NAPVoltage-gated potassium channel subunit beta-2 / 0.713
1c9w NAPAldose reductase-related protein 2 / 0.710
4jq3 NAPAldo-keto reductase family 1 member C2 / 0.701
3ln3 NADAldo-keto reductase family 1 member C13 / 0.699
2hdj NDPAldo-keto reductase family 1 member C2 / 0.697
1az2 NAPAldose reductase 1.1.1.21 0.696
3wg6 NDPNADPH-dependent conjugated polyketone reductase C1 / 0.691
2fvl NAPAldo-keto reductase family 1 member C4 1.1.1.225 0.689
2vdg NDPAldose reductase 1.1.1.21 0.689
3lnm NAPVoltage-gated potassium channel subunit beta-2 / 0.684
2c91 NAPAflatoxin B1 aldehyde reductase member 2 / 0.682
1ye6 NAPNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.676
4dz5 NAPAldo-keto reductase family 1 member C3 / 0.673
1lqa NDPProtein tas / 0.666
4aub NAPL-glyceraldehyde 3-phosphate reductase 1.1.1 0.660
2p5n NDPAldo-keto reductase family 1 member C21 1.1.1 0.656
1lwi NAP3-alpha-hydroxysteroid dehydrogenase 1.1.1.50 0.653
1pz1 NAPGeneral stress protein 69 / 0.652
1og6 NAPOxidoreductase YdhF 1 0.651