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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1lvg 5GP Guanylate kinase 2.7.4.8

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1lvg 5GPGuanylate kinase 2.7.4.8 1.124
3lnc 5GPGuanylate kinase / 0.910
1gky 5GPGuanylate kinase 2.7.4.8 0.892
2j41 5GPGuanylate kinase / 0.884
2anb 5GPGuanylate kinase 2.7.4.8 0.864
1ex7 5GPGuanylate kinase 2.7.4.8 0.848
3tr0 5GPGuanylate kinase / 0.796
2an9 GDPGuanylate kinase 2.7.4.8 0.759
3ez3 ZOLFarnesyl pyrophosphate synthase, putative / 0.683
3qe2 NAPNADPH--cytochrome P450 reductase / 0.668
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.668
2ivf MGDAlpha-subunit of ethylbenzene dehydrogenase / 0.667
2f3r G5PGuanylate kinase 2.7.4.8 0.666
3hl4 CDCCholine-phosphate cytidylyltransferase A / 0.663
2du2 FMNLactate oxidase / 0.662
4a1o AMZBifunctional purine biosynthesis protein PurH 2.1.2.3 0.661
1b5d DCMDeoxycytidylate 5-hydroxymethyltransferase 2.1.2.8 0.658
1f20 NAPNitric oxide synthase, brain 1.14.13.39 0.651
5cc9 DDFDihydrofolate reductase 1.5.1.3 0.651
5hpy GDPTransforming protein RhoA / 0.651