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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1lua NAP Bifunctional protein MdtA 1.5.1.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1lua NAPBifunctional protein MdtA 1.5.1.5 1.145
1lsj NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.696
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.692
2qx7 NAPEugenol synthase 1 1.1.1.318 0.676
2r6j NDPEugenol synthase 1 1.1.1.318 0.676
2qw8 NAPEugenol synthase 1 1.1.1.318 0.674
3pef NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.668
1i2b NADUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.665
5doz NDPJamJ / 0.664
2c29 NAPDihydroflavonol 4-reductase / 0.663
2f1k NAPPrephenate dehydrogenase / 0.663
3pdu NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.662
3keq NADRedox-sensing transcriptional repressor Rex / 0.658
3slk NDPPolyketide synthase extender module 2 / 0.658
2voj NADAlanine dehydrogenase 1.4.1.1 0.656
4xrg NADHomospermidine synthase 2.5.1.44 0.654
5d2e NAPMlnE / 0.654
3dtt NAPNADP oxidoreductase, coenzyme F420-dependent / 0.652
4l4x NDPAmphI / 0.652
3oet NADErythronate-4-phosphate dehydrogenase / 0.650