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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1lc3 NAD Biliverdin reductase A 1.3.1.24

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1lc3 NADBiliverdin reductase A 1.3.1.24 0.966
2h63 NAPBiliverdin reductase A 1.3.1.24 0.691
3oa2 NADUDP-N-acetyl-2-amino-2-deoxy-D-glucuronate oxidase / 0.678
1h6d NDPGlucose--fructose oxidoreductase 1.1.99.28 0.673
2ixb NADAlpha-N-acetylgalactosaminidase 3.2.1.49 0.667
2ixa NADAlpha-N-acetylgalactosaminidase 3.2.1.49 0.665
3q2k NAIProbable oxidoreductase / 0.661
5ijz NAPNADP-specific glutamate dehydrogenase 1.4.1.4 0.657