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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1kts C24 Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1kts C24Prothrombin 3.4.21.5 1.171
2cf8 ESHProthrombin 3.4.21.5 0.798
1oyt FSNProthrombin 3.4.21.5 0.770
1ype UIPProthrombin 3.4.21.5 0.768
4e5i 0N9Polymerase acidic protein / 0.744
2anm CDOProthrombin 3.4.21.5 0.741
2a2x NA9Prothrombin 3.4.21.5 0.731
3plp BBACationic trypsin 3.4.21.4 0.723
1d4p BPPProthrombin 3.4.21.5 0.721
1ypg UIRProthrombin 3.4.21.5 0.719
1ypk CCRProthrombin 3.4.21.5 0.718
1nzq 162Prothrombin 3.4.21.5 0.710
4bam MM9Prothrombin 3.4.21.5 0.707
2ziq 26UProthrombin 3.4.21.5 0.702
4ayv 9MQProthrombin 3.4.21.5 0.697
3utu 1TSProthrombin 3.4.21.5 0.693
2cf9 348Prothrombin 3.4.21.5 0.692
3biv 11UProthrombin 3.4.21.5 0.691
4ax9 N5NProthrombin 3.4.21.5 0.687
1ypm RA4Prothrombin 3.4.21.5 0.684
2bok 784Coagulation factor X 3.4.21.6 0.682
2zfq 45UProthrombin 3.4.21.5 0.681
2zhq 27UProthrombin 3.4.21.5 0.681
4bak M67Prothrombin 3.4.21.5 0.681
1ypl RA8Prothrombin 3.4.21.5 0.678
1lpk CBBCoagulation factor X 3.4.21.6 0.677
1c4u IH1Prothrombin 3.4.21.5 0.672
1vzq SHYProthrombin 3.4.21.5 0.672
1wqv PSMCoagulation factor VII 3.4.21.21 0.670
2zda 32UProthrombin 3.4.21.5 0.666
2zg0 50UProthrombin 3.4.21.5 0.665
2zhe 13UProthrombin 3.4.21.5 0.665
2znk 31UProthrombin 3.4.21.5 0.665
2gde SN3Prothrombin 3.4.21.5 0.664
4ayy 9MXProthrombin 3.4.21.5 0.662
2bdy UNBProthrombin 3.4.21.5 0.660
4bao MVFProthrombin 3.4.21.5 0.659
2v3o I26Prothrombin 3.4.21.5 0.658
3biu 10UProthrombin 3.4.21.5 0.657
1k22 MELProthrombin 3.4.21.5 0.655
1k21 IGNProthrombin 3.4.21.5 0.653
2cn0 F25Prothrombin 3.4.21.5 0.653
1c1u BAIProthrombin 3.4.21.5 0.650