sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1kqc | FMN | Oxygen-insensitive NAD(P)H nitroreductase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1kqc | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 1.301 | |
| 1kqb | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 1.295 | |
| 1kqd | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 1.291 | |
| 1icu | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 1.274 | |
| 1oon | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 1.251 | |
| 1nec | FMN | Oxygen-insensitive NAD(P)H nitroreductase | 1 | 1.226 | |
| 1ylr | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 1.214 | |
| 1oo5 | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 1.205 | |
| 1yki | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 1.205 | |
| 1icv | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 1.154 | |
| 1ooq | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 1.145 | |
| 1ylu | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 1.120 | |
| 1vfr | FMN | Major NAD(P)H-flavin oxidoreductase | 1.6.99 | 1.114 | |
| 3x22 | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 1.052 | |
| 1ds7 | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 1.034 | |
| 3x21 | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 1.000 | |
| 3ge6 | FMN | Nitroreductase | / | 0.951 | |
| 2wzv | FMN | Nitroreductase NfnB | / | 0.936 | |
| 2wzw | FMN | Nitroreductase NfnB | / | 0.898 | |
| 3koq | FMN | Putative nitroreductase | / | 0.898 | |
| 3qdl | FMN | Oxygen-insensitive NADPH nitroreductase | / | 0.875 | |
| 2hay | FMN | Putative NAD(P)H-flavin oxidoreductase | / | 0.855 | |
| 3gag | FMN | Putative NADH dehydrogenase NAD(P)H nitroreductase | / | 0.854 | |
| 3of4 | FMN | Nitroreductase | / | 0.852 | |
| 3pxv | FMN | Nitroreductase | / | 0.840 | |
| 4eo3 | FMN | Bacterioferritin comigratory protein/NADH dehydrogenase | / | 0.816 | |
| 3bem | FMN | Putative NAD(P)H nitroreductase MhqN | 1 | 0.808 | |
| 4qly | FMN | Enone reductase CLA-ER | / | 0.802 | |
| 2isj | FMN | 5,6-dimethylbenzimidazole synthase | 1.13.11.79 | 0.777 | |
| 2isl | FNR | 5,6-dimethylbenzimidazole synthase | 1.13.11.79 | 0.776 | |
| 3e39 | FMN | Nitroreductase | / | 0.766 | |
| 2ifa | FMN | Uncharacterized protein | / | 0.738 | |
| 2fre | FMN | NAD(P)H-flavin oxidoreductase | / | 0.735 | |
| 3hj9 | FMN | Uncharacterized protein | / | 0.725 | |
| 5cho | FAD | Flavin reductase | / | 0.712 | |
| 3gh8 | FMN | Iodotyrosine deiodinase 1 | 1.21.1.1 | 0.711 | |
| 4hnb | FMN | LOV protein | / | 0.707 | |
| 3eo8 | FMN | Putative nitroreductase | / | 0.693 | |
| 4ttc | FMN | Iodotyrosine deiodinase 1 | / | 0.692 | |
| 2bkj | FMN | NADPH-flavin oxidoreductase | / | 0.687 | |
| 1mok | FAD | 2-oxopropyl-CoM reductase, carboxylating | 1.8.1.5 | 0.685 | |
| 3g6x | DGT | DNA polymerase iota | 2.7.7.7 | 0.681 | |
| 1i0s | FMN | Ferric-chelate reductase (NAD(P)H) | / | 0.680 | |
| 1pkv | RBF | Riboflavin synthase | 2.5.1.9 | 0.680 | |
| 2i02 | FMN | Pyridoxamine 5'-phosphate oxidase-related, FMN-binding | / | 0.679 | |
| 4dna | FAD | Probable glutathione reductase | / | 0.677 | |
| 4xoo | FMN | Coenzyme F420:L-glutamate ligase | / | 0.674 | |
| 4eer | FMN | Phototropin-2 | 2.7.11.1 | 0.673 | |
| 3e4v | FMN | Uncharacterized protein | / | 0.672 | |
| 1a8p | FAD | Ferredoxin--NADP reductase | / | 0.670 | |
| 2d29 | FAD | Acyl-CoA dehydrogenase | / | 0.670 | |
| 2isk | FNR | 5,6-dimethylbenzimidazole synthase | 1.13.11.79 | 0.669 | |
| 3to0 | FMN | Iodotyrosine deiodinase 1 | 1.21.1.1 | 0.668 | |
| 2ard | FDA | Flavin-dependent tryptophan halogenase PrnA | 1.14.19.9 | 0.667 | |
| 3w2e | FAD | NADH-cytochrome b5 reductase 3 | 1.6.2.2 | 0.667 | |
| 3gfd | FMN | Iodotyrosine deiodinase 1 | 1.21.1.1 | 0.665 | |
| 4l82 | FMN | Uncharacterized protein | / | 0.665 | |
| 4ttb | FMN | Iodotyrosine deiodinase 1 | / | 0.665 | |
| 4f07 | FAD | Styrene monooxygenase component 2 | / | 0.662 | |
| 2qa1 | FAD | PgaE | / | 0.661 | |
| 3haz | FAD | Bifunctional protein PutA | / | 0.661 | |
| 3rye | UNR | Farnesyl pyrophosphate synthase | 2.5.1.10 | 0.661 | |
| 4d7e | FAD | Putative lysine-N-oxygenase | / | 0.661 | |
| 1qlt | FAD | Vanillyl-alcohol oxidase | 1.1.3.38 | 0.660 | |
| 5j3w | FMN | Sensory box protein | / | 0.656 | |
| 1djq | FMN | Trimethylamine dehydrogenase | 1.5.8.2 | 0.655 | |
| 2e83 | FMN | FMN-binding protein | / | 0.655 | |
| 1rz0 | FAD | Phenol 2-hydroxylase component B | / | 0.652 | |
| 1d7l | RFL | p-hydroxybenzoate hydroxylase | / | 0.651 | |
| 3a3g | DLZ | Lumazine protein | / | 0.651 | |
| 4qi5 | FAD | Cellobiose dehydrogenase | / | 0.651 | |
| 1eje | FMN | Protein MTH_152 | / | 0.650 | |
| 2qdx | FAD | Ferredoxin--NADP+ reductase | / | 0.650 | |
| 3m0o | FAD | Monomeric sarcosine oxidase | 1.5.3.1 | 0.650 |