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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1kp8 AGS 60 kDa chaperonin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1kp8 AGS60 kDa chaperonin / 1.098
4ki8 ADP60 kDa chaperonin / 0.869
1sx4 ADP60 kDa chaperonin / 0.837
3ruv ANPChaperonin / 0.832
1pf9 ADP60 kDa chaperonin / 0.828
3ruq ADPChaperonin / 0.807
1q3q ANPThermosome subunit alpha / 0.760
3rus ADPChaperonin / 0.759
1q3s ADPThermosome subunit alpha / 0.733
2x60 GTPMannose-1-phosphate guanylyltransferase / 0.666
2pz8 APCNH(3)-dependent NAD(+) synthetase / 0.665
1ngi ANPHeat shock cognate 71 kDa protein / 0.662
2bu2 ATP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial 2.7.11.2 0.661
2iw1 U2FLipopolysaccharide core biosynthesis protein RfaG 2.4 0.659
4a6a TTPdCTP deaminase 3.5.4.13 0.655